Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.9e-58 228.4 120 100.0
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 2.8e-29 132.1 117 64.1
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 5.9e-27 124.4 122 64.8
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 7.7e-27 124.0 118 60.2
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 7.7e-27 124.0 122 59.8
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.3e-26 123.2 118 57.6
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 1.0e-23 113.6 119 55.5
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 2.3e-23 112.5 118 52.5
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 3.0e-23 112.1 120 55.0
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.2e-22 110.2 120 57.5
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 5.7e-22 107.8 120 52.5
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 7.5e-22 107.5 118 54.2
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 4.8e-21 104.8 117 53.8
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.4e-20 103.2 117 53.8
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 1.4e-20 103.2 119 47.1
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 9.1e-20 100.5 117 52.1
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 9.1e-20 100.5 117 52.1
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 9.1e-20 100.5 119 47.1
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 2.7e-19 99.0 120 51.7
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 7.7e-19 97.4 120 52.5
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 1.3e-18 96.7 119 45.4
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.3e-18 96.7 118 50.8
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.2e-18 95.9 115 50.4
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 2.9e-18 95.5 122 50.0
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 6.5e-18 94.4 119 52.9
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.1e-17 93.6 116 52.6
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 3.2e-17 92.0 123 50.4
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 5.5e-17 91.3 117 47.0
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 9.4e-17 90.5 122 46.7
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 9.4e-17 90.5 119 43.7
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 2.7e-16 89.0 119 48.7
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 6.1e-16 87.8 124 41.1
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.0e-15 87.0 120 45.8
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.0e-15 87.0 119 47.9
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 1.8e-15 86.3 122 46.7
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 2.3e-15 85.9 123 40.7
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 3.0e-15 85.5 122 45.1
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 5.2e-15 84.7 118 42.4
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 6.8e-15 84.3 127 42.5
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 8.8e-15 84.0 119 50.4
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.2e-14 83.6 125 39.2
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 2.0e-14 82.8 125 42.4
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.0e-14 82.8 123 48.8
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 2.6e-14 82.4 125 44.8
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 4.4e-14 81.6 127 41.7
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 4.4e-14 81.6 117 47.9
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 5.7e-14 81.3 122 42.6
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 5.7e-14 81.3 119 42.0
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 7.5e-14 80.9 122 44.3
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 9.8e-14 80.5 120 41.7
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 1.3e-13 80.1 123 43.1
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 1.7e-13 79.7 119 44.5
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 1.7e-13 79.7 89 51.7
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 2.2e-13 79.3 57 63.2
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 2.8e-13 79.0 82 50.0
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 2.8e-13 79.0 119 42.9
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 2.8e-13 79.0 120 48.3
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 2.8e-13 79.0 119 46.2
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 4.8e-13 78.2 103 44.7
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 4.8e-13 78.2 126 42.9
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 6.3e-13 77.8 121 49.6
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 8.3e-13 77.4 82 47.6
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 8.3e-13 77.4 118 42.4
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 1.1e-12 77.0 120 41.7
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 1.8e-12 76.3 117 47.0
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 2.4e-12 75.9 119 42.9
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 2.4e-12 75.9 119 42.9
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 3.1e-12 75.5 125 40.0
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 4.1e-12 75.1 125 39.2
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 4.1e-12 75.1 122 38.5
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 5.4e-12 74.7 123 42.3
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 5.4e-12 74.7 119 43.7
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 5.4e-12 74.7 82 53.7
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 7.0e-12 74.3 125 41.6
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.2e-11 73.6 121 39.7
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.6e-11 73.2 117 41.9
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 2.0e-11 72.8 128 42.2
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 4.5e-11 71.6 116 41.4
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 4.5e-11 71.6 116 41.4
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 4.5e-11 71.6 80 47.5
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 4.5e-11 71.6 80 46.2
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 5.9e-11 71.2 121 39.7
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 7.7e-11 70.9 120 40.0
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.0e-10 70.5 124 41.9
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.3e-10 70.1 124 41.9
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 1.3e-10 70.1 122 42.6
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 1.7e-10 69.7 75 48.0
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.7e-10 69.7 119 42.0
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 2.3e-10 69.3 117 39.3
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 2.3e-10 69.3 123 42.3
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 2.9e-10 68.9 124 41.1
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 3.8e-10 68.6 126 38.1
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 8.6e-10 67.4 115 36.5
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-09 67.0 76 47.4
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 1.1e-09 67.0 119 37.8
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 1.5e-09 66.6 110 40.9
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 1.5e-09 66.6 122 41.0
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 1.5e-09 66.6 118 39.8
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.5e-09 66.6 90 43.3
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 2.5e-09 65.9 122 36.1
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 3.3e-09 65.5 125 40.0
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 3.3e-09 65.5 121 38.0
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 5.5e-09 64.7 78 51.3
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 1.6e-08 63.2 92 44.6
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 2.1e-08 62.8 137 36.5
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 2.8e-08 62.4 90 44.4
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 4.7e-08 61.6 123 38.2
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.8e-07 59.7 64 50.0
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.8e-07 59.7 64 50.0
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 3.0e-07 58.9 87 43.7
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 3.0e-07 58.9 88 39.8
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 3.0e-07 58.9 119 36.1
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 4.0e-07 58.5 76 44.7
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.5e-06 56.6 57 49.1
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 2.6e-06 55.8 57 42.1
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 3.4e-06 55.5 57 42.1
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 9.8e-06 53.9 80 38.8


User provided reference genes

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