Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.6e-203 711.8 355 100.0
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.5e-187 659.4 368 90.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 4.4e-171 604.7 351 84.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.7e-168 595.5 353 82.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 4.6e-168 594.7 346 82.9
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.8e-168 594.0 347 84.4
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.3e-167 593.2 353 83.6
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.0e-167 592.0 346 82.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.0e-167 591.3 353 83.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.5e-166 589.0 354 82.2
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.3e-166 588.2 345 83.5
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.2e-165 586.6 347 81.0
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.1e-165 585.9 349 83.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.6e-165 585.1 352 81.5
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.3e-164 582.4 350 82.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.9e-164 580.5 349 82.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.2e-162 575.9 352 81.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.9e-162 575.5 352 82.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.7e-162 575.1 342 83.3
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.2e-161 570.5 354 79.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.2e-160 570.1 352 79.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.5e-160 568.5 352 80.1
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 4.6e-160 568.2 352 80.1
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.6e-160 568.2 352 80.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 6.0e-160 567.8 348 79.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.0e-159 567.0 349 79.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 3.0e-159 565.5 349 80.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.3e-158 562.0 350 80.3
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 7.3e-158 560.8 356 76.7
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.2e-157 557.8 326 84.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.4e-156 556.6 349 78.2
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.7e-154 549.7 358 76.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.2e-154 549.3 325 83.7
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.2e-154 549.3 350 78.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.2e-154 549.3 353 78.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.7e-154 548.5 381 73.0
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.1e-153 547.0 368 75.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.5e-152 542.0 354 76.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.0e-152 541.2 350 77.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.7e-151 539.7 352 77.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.7e-151 539.7 325 80.9
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.3e-151 539.3 346 76.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.1e-151 538.1 350 74.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.1e-150 537.0 358 74.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.5e-150 536.6 350 75.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.9e-150 536.2 329 79.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.9e-150 536.2 346 76.0
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.9e-150 536.2 360 72.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.3e-150 535.4 355 75.8
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.3e-150 535.0 349 76.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 4.3e-150 535.0 351 75.8
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.6e-149 533.1 354 74.9
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.1e-149 532.7 351 75.5
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.8e-149 532.3 346 75.7
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.7e-149 531.6 352 75.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.8e-148 529.6 350 74.6
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.4e-148 529.3 360 73.6
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.4e-148 529.3 348 75.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.1e-148 528.9 357 75.4
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.0e-148 528.5 355 75.2
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 5.2e-148 528.1 315 83.8
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 6.8e-148 527.7 331 77.6
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.4e-147 525.4 353 73.4
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 4.4e-147 525.0 349 74.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.6e-147 524.2 349 75.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.2e-146 522.7 353 74.2
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 8.4e-146 520.8 358 74.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.2e-145 518.8 337 75.7
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.2e-145 518.5 380 69.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 9.2e-145 517.3 407 66.8
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.1e-144 516.2 328 75.9
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.0e-144 514.6 332 76.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.0e-143 513.8 357 73.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.3e-143 512.7 359 70.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.3e-143 512.7 337 73.9
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.9e-143 511.9 352 73.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.9e-142 509.6 346 73.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 9.6e-142 507.3 326 75.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.2e-141 506.9 353 72.0
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.6e-141 506.5 347 72.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.6e-141 505.4 356 71.1
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.6e-141 505.4 329 76.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.6e-141 505.4 330 74.2
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.6e-141 505.4 331 72.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 8.1e-141 504.2 331 74.3
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-140 503.1 325 76.6
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 9.0e-140 500.7 377 67.4
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 5.8e-139 498.0 360 68.9
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-138 496.9 324 74.1
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.9e-138 495.7 349 69.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.9e-138 495.7 329 72.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 4.9e-138 495.0 344 70.1
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 6.4e-138 494.6 349 68.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 8.4e-138 494.2 329 75.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.1e-137 493.8 341 71.8
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.4e-137 493.4 342 74.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.2e-137 492.3 352 67.9
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.2e-137 492.3 353 68.0
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 4.6e-136 488.4 320 72.8
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 4.6e-136 488.4 326 73.9
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 6.0e-136 488.0 331 69.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-135 487.3 340 72.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.7e-135 486.5 324 71.6
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.7e-135 486.5 324 71.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.3e-135 486.1 340 72.6
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-135 485.7 323 70.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-135 485.7 311 76.8
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.0e-135 485.7 345 70.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.5e-134 483.4 319 71.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 5.6e-134 481.5 324 70.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 7.3e-134 481.1 324 70.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 4.8e-133 478.4 369 67.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 5.3e-132 474.9 326 72.7
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-131 473.8 273 86.4
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.4e-131 472.2 363 65.6
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.2e-130 469.5 308 75.0
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.9e-130 468.4 344 68.9
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.4e-130 468.0 334 70.7
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.4e-130 468.0 323 70.9
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.4e-129 466.8 321 72.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.4e-129 466.1 370 63.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.5e-128 462.2 337 69.4
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.1e-125 453.0 272 83.1
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.7e-125 452.2 335 66.3
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.8e-125 451.8 352 66.8
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 6.2e-125 451.4 324 68.8
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.5e-123 445.3 323 66.3
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.5e-121 439.5 550 46.4
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.5e-118 430.3 283 78.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.5e-115 418.7 268 77.6
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-106 389.0 322 61.8
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.4e-100 369.8 350 54.9
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 7.7e-99 364.8 232 77.2
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.1e-97 360.9 330 55.8
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.8e-92 343.6 206 82.5
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 7.0e-92 341.7 281 63.7
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 9.1e-92 341.3 242 68.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.0e-90 335.5 225 74.2
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.6e-88 330.5 290 57.9
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 5.2e-87 325.5 203 79.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.4e-84 316.6 228 71.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 5.3e-84 315.5 267 62.2
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.8e-77 292.4 187 77.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-73 281.2 163 84.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.6e-67 260.8 370 41.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.6e-64 250.8 182 67.0
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.8e-61 240.0 214 59.3
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 4.1e-60 236.1 184 66.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.0e-60 235.3 171 67.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.0e-59 233.8 161 69.6
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-56 224.6 141 75.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.7e-53 214.2 269 47.6
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.1e-49 201.4 341 39.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.6e-48 196.4 202 53.5
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.9e-42 176.4 120 75.8
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.1e-32 144.1 152 50.7
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.8e-31 141.0 303 34.0
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.1e-27 127.5 373 32.2
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 6.0e-27 125.9 250 34.0
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 8.7e-26 122.1 71 83.1
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-23 115.2 71 76.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.4e-22 109.8 206 35.4
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.5e-19 100.1 63 76.2
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.9e-18 96.7 57 78.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.3e-17 93.6 56 82.1
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 7.3e-17 92.4 91 52.7
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 7.1e-12 75.9 75 52.0
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.8e-10 71.2 49 65.3
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 2.5e-09 67.4 60 60.0
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 4.0e-07 60.1 35 74.3


User provided reference genes

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