Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.7e-145 519.2 255 100.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.8e-132 474.9 253 90.5
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 2.3e-129 465.7 289 80.6
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 9.0e-118 427.2 253 79.4
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.4e-115 419.9 257 75.9
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.9e-115 419.5 255 76.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 4.2e-115 418.3 255 76.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 4.2e-115 418.3 255 77.3
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 9.4e-115 417.2 256 77.7
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.2e-114 416.8 255 76.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 6.7e-113 411.0 255 76.5
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.7e-113 411.0 255 74.5
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 6.7e-113 411.0 260 76.5
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.1e-112 410.2 267 74.5
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.5e-112 409.8 256 75.8
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.5e-112 409.8 255 76.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.0e-112 409.5 255 76.1
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 3.3e-112 408.7 255 74.5
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 4.3e-112 408.3 253 75.9
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.7e-112 407.9 255 74.5
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.7e-111 406.4 255 76.1
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.8e-111 405.6 255 74.9
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 6.3e-111 404.4 255 74.1
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 8.2e-111 404.1 250 77.6
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 8.2e-111 404.1 256 77.0
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.4e-110 403.3 256 75.4
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 4.1e-110 401.7 256 74.2
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 6.9e-110 401.0 257 74.7
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 9.1e-110 400.6 257 75.1
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.5e-109 399.8 255 74.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 5.9e-109 397.9 265 72.5
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 7.7e-109 397.5 264 73.1
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-108 396.7 256 73.0
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.7e-108 396.4 258 73.6
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.7e-108 396.4 253 73.9
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 5.0e-108 394.8 256 73.4
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 6.5e-108 394.4 274 70.8
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 8.5e-108 394.0 255 74.9
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.1e-107 393.7 255 72.9
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.9e-107 392.9 253 72.3
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.2e-107 391.7 255 72.5
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 4.2e-107 391.7 255 73.7
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 5.5e-107 391.3 255 74.5
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.7e-106 389.0 255 72.2
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 3.6e-106 388.7 272 69.5
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 3.6e-106 388.7 257 72.8
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.0e-105 387.1 257 71.2
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.0e-105 387.1 257 71.2
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-105 386.0 256 71.5
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 3.0e-105 385.6 262 72.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 6.7e-105 384.4 252 71.4
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 6.7e-105 384.4 255 71.0
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 8.8e-105 384.0 252 71.4
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 8.8e-105 384.0 256 70.3
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-104 383.3 252 71.4
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.5e-104 383.3 252 71.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.0e-104 382.9 255 70.6
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 2.0e-104 382.9 255 71.0
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 2.6e-104 382.5 253 70.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 3.3e-104 382.1 253 70.4
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 3.3e-104 382.1 255 71.4
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 4.4e-104 381.7 258 69.8
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 5.7e-104 381.3 264 70.1
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.7e-103 379.8 254 68.9
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-103 379.4 255 71.0
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.2e-103 379.4 266 68.8
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.8e-103 379.0 255 70.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.7e-103 378.6 253 69.6
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.7e-103 378.6 255 70.2
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 4.8e-103 378.3 253 69.6
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 8.2e-103 377.5 261 68.6
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.4e-102 376.7 253 70.4
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-102 376.3 253 70.4
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-102 376.3 253 70.4
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.1e-102 375.2 253 70.4
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 5.3e-102 374.8 215 80.9
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 7.0e-102 374.4 253 70.0
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 7.0e-102 374.4 261 69.3
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 7.0e-102 374.4 261 70.5
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 9.1e-102 374.0 252 68.3
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 9.1e-102 374.0 257 68.9
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 9.1e-102 374.0 255 71.0
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.2e-101 373.6 255 68.6
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 3.5e-101 372.1 259 68.3
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.5e-101 372.1 264 68.2
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.0e-100 370.5 253 68.8
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.0e-100 370.5 255 68.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.9e-100 369.0 256 69.1
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.0e-100 368.2 234 77.8
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.0e-100 368.2 256 67.6
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.1e-99 367.1 256 68.0
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 9.4e-99 364.0 255 69.8
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 3.6e-98 362.1 257 67.3
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 2.3e-97 359.4 251 68.5
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 3.9e-97 358.6 315 59.0
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.9e-97 358.6 261 67.0
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.1e-96 357.1 257 66.9
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 2.6e-96 355.9 259 64.9
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 7.4e-96 354.4 253 65.6
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.7e-95 353.2 253 64.8
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.7e-95 353.2 253 65.2
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 3.7e-95 352.1 255 66.7
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 6.3e-95 351.3 257 66.9
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 8.2e-95 350.9 256 64.1
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.1e-94 350.5 269 61.7
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 1.1e-94 350.5 256 66.4
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.1e-94 349.0 211 75.4
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 4.1e-94 348.6 258 64.7
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.6e-93 345.9 211 75.8
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.0e-92 344.0 236 70.8
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 3.8e-92 342.0 211 75.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 5.0e-92 341.7 254 66.1
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.5e-91 339.3 254 65.7
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.4e-89 333.6 308 58.8
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.8e-89 333.2 257 65.4
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.3e-89 332.8 194 78.9
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 5.7e-88 328.2 271 57.6
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 7.5e-88 327.8 194 78.9
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 7.5e-88 327.8 211 70.6
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 8.3e-87 324.3 243 64.6
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.2e-84 316.2 211 70.6
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.5e-83 311.6 194 74.2
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.1e-82 309.7 201 73.1
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 2.6e-80 302.8 191 72.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 5.7e-80 301.6 191 75.9
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 9.8e-80 300.8 182 78.0
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.8e-79 299.3 236 57.2
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.8e-79 298.5 240 56.2
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.1e-78 297.4 253 58.9
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.7e-76 290.0 169 81.7
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 8.0e-74 281.2 227 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.6e-72 276.2 249 53.0
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.6e-66 256.9 258 49.2
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.2e-65 251.9 360 43.3
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 4.4e-64 248.8 182 65.9
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.3e-59 232.6 154 67.5
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.6e-59 231.9 268 50.4
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 8.9e-57 224.6 233 48.9
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.4e-56 222.6 209 55.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.0e-52 209.5 179 53.6
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.4e-48 196.1 178 51.7
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.9e-47 193.0 127 70.9
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 6.4e-47 191.8 134 64.9
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 6.4e-47 191.8 147 62.6
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.0e-44 183.0 127 68.5
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 6.4e-39 165.2 248 35.5
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 6.6e-36 155.2 299 33.8
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-33 147.5 103 68.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.2e-32 144.4 95 67.4
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.6e-32 143.3 189 39.7
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 5.8e-32 142.1 274 34.3
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.9e-32 141.4 125 56.8
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 5.4e-30 135.6 172 47.1
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.3e-27 126.3 165 41.8
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 8.1e-26 121.7 100 58.0
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 9.3e-22 108.2 78 64.1
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.6e-19 99.0 57 80.7
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.6e-19 98.2 124 40.3
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.6e-16 90.1 52 82.7
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.6e-16 90.1 52 82.7
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.6e-16 88.6 83 57.8
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.4e-14 84.3 55 69.1
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.4e-09 67.0 51 58.8
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 6.9e-09 65.5 58 50.0
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.6e-08 63.5 40 62.5
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.6e-08 63.5 40 62.5
FAN05G3835 Fragaria x ananassa HOM05D025046 ORTHO05D205720 3.8e-07 59.7 51 58.8
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-07 59.3 34 70.6
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 5.0e-07 59.3 47 53.2
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.9e-06 57.4 36 75.0


User provided reference genes

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