Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 3763.8 1931 100.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 3513.4 1924 94.1
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2715.6 1992 73.6
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2575.0 2002 69.8
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2521.1 1985 69.0
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2520.7 1957 68.9
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2501.5 1967 68.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2497.6 1971 68.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2469.5 1950 67.9
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2469.5 1994 67.7
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2463.3 1950 67.7
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2459.1 1950 67.5
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2454.1 1995 66.6
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2444.8 2113 63.8
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2416.0 1995 66.3
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2404.0 1956 67.2
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2348.9 1961 65.8
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2348.5 1966 65.5
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2343.5 1962 65.7
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2334.3 1962 65.5
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2314.3 1943 65.2
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2304.6 1963 65.2
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2300.0 1944 65.2
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2291.2 1956 64.3
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2290.4 1955 64.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2288.5 1961 64.0
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2286.5 2013 62.2
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2274.6 2011 62.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2272.3 1960 64.2
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2233.0 1931 62.9
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2223.4 1945 62.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2221.4 1958 62.4
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2211.0 1548 71.8
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2211.0 1606 69.8
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2207.2 1950 63.1
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2205.6 1952 62.1
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2197.9 1948 61.6
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2196.8 1971 61.5
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2196.8 1946 62.3
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2193.3 1542 70.9
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2187.9 1953 62.1
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2186.0 1944 62.8
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2167.5 1996 60.5
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2166.7 2002 59.4
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2164.4 1970 61.3
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2161.7 1993 60.5
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2156.3 1993 59.9
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2149.8 1978 60.9
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2149.8 1995 59.4
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2139.8 1936 62.0
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 2070.8 1989 58.3
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2056.6 2070 57.5
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 2055.0 1999 57.8
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 2054.6 1991 57.7
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 2054.3 1962 58.7
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2052.7 2120 56.5
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 2035.4 1973 58.1
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 2035.4 1972 57.8
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 2034.6 2002 57.2
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 2033.5 1949 58.1
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 2027.3 2116 55.7
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 2025.4 1866 59.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 2025.0 1876 59.0
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 2020.4 1939 58.0
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 2016.1 1932 58.3
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 2010.0 1848 59.2
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 2005.3 1938 57.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1996.5 1966 57.1
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1981.8 2022 55.4
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1974.1 2014 55.6
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1969.5 1471 67.8
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1968.0 1933 57.6
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1959.5 1692 63.9
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1952.6 1967 56.3
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1938.3 1971 55.2
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1922.5 2061 54.1
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1912.5 1971 55.1
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1906.3 1979 55.1
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1901.3 1335 71.6
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1872.4 1990 53.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1864.4 1876 54.9
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1857.8 1979 53.4
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1828.1 1979 52.9
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1827.4 1955 53.4
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1817.0 1988 52.4
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1815.0 1950 53.3
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1813.1 1952 53.2
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1800.8 1984 52.8
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1794.6 1958 53.4
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1775.4 1972 52.2
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1773.8 1942 53.7
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1773.8 1942 53.7
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1773.8 1982 52.8
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1738.4 1869 53.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1730.3 1955 51.7
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1722.2 1246 71.2
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1681.8 1954 50.9
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1666.4 1477 59.0
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1608.6 1957 48.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1589.7 1210 70.2
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1193.3 1125 61.9
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1103.2 975 60.6
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1100.5 1759 38.6
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1091.6 1632 40.4
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 2.6e-311 1073.2 2025 37.1
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 4.5e-310 1068.9 1960 37.7
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 8.5e-309 1064.7 1715 38.7
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.7e-307 1059.7 1152 54.5
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 5.9e-302 1042.0 904 60.8
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.0e-301 1041.2 1941 38.4
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 3.6e-299 1032.7 1083 57.6
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.2e-282 975.7 995 58.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-257 894.8 1092 48.2
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.1e-252 878.2 1086 48.8
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.5e-228 797.3 1470 35.9
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.9e-224 783.9 1787 31.2
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.3e-213 747.7 577 65.7
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.0e-192 679.1 543 65.7
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 3.2e-191 674.1 1171 38.7
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 4.2e-183 647.1 470 71.3
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.1e-159 569.3 847 44.3
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.7e-150 537.3 664 46.7
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 6.1e-142 510.4 738 48.4
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.7e-139 502.3 571 50.3
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.4e-133 482.6 548 48.7
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.1e-129 468.8 565 45.5
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.5e-100 372.9 288 67.4
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 5.8e-84 317.8 380 48.7
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 3.2e-74 285.4 437 41.4
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 4.1e-69 268.5 731 36.3
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 9.1e-69 267.3 380 43.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 6.5e-59 234.6 253 49.4
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.2e-52 213.8 598 32.6
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.1e-50 207.2 558 36.7
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 4.1e-45 188.7 343 39.4
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 3.5e-44 185.7 140 63.6
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-43 183.0 165 55.2
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.8e-37 163.3 1199 21.9
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 8.6e-35 154.5 164 47.6
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.6e-34 151.8 225 38.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 9.5e-34 151.0 175 50.9
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 6.1e-33 148.3 163 46.6
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 7.5e-31 141.4 164 43.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 9.8e-31 141.0 80 80.0
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 4.1e-29 135.6 121 58.7
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 2.0e-28 133.3 85 78.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 7.8e-28 131.3 104 67.3
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.3e-27 130.6 368 31.0
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 4.7e-25 122.1 140 50.7
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 1.0e-24 120.9 410 26.3
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.8e-24 120.2 222 38.7
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 4.0e-24 119.0 132 50.0
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.8e-16 93.6 56 75.0
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-13 84.0 56 71.4
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 5.4e-13 82.0 165 33.3
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 2.1e-12 80.1 140 37.1
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 6.6e-11 75.1 73 54.8
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 3.3e-10 72.8 140 35.0
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 9.5e-10 71.2 59 61.0
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.6e-09 69.3 70 48.6
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 1.1e-08 67.8 146 41.8
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 4.0e-08 65.9 129 43.4
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 4.0e-08 65.9 106 38.7
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 5.2e-08 65.5 184 40.2
Cpa.g.sc193.11 Carica papaya HOM05D004392 ORTHO05D004846 1.3e-06 60.8 65 43.1
Phvul.011G172900 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 4.9e-06 58.9 139 40.3
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 6.4e-06 58.5 62 50.0


User provided reference genes

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