Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.4e-201 706.1 361 100.0
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 4.0e-196 688.0 361 97.5
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.9e-174 615.9 364 86.5
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 6.9e-172 607.4 355 85.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 2.2e-170 602.4 361 84.5
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.7e-168 595.5 345 86.4
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.0e-167 593.6 349 85.7
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.3e-167 593.2 345 86.1
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.3e-167 592.4 331 89.1
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.9e-166 589.3 357 82.9
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.5e-166 589.0 331 88.2
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 7.4e-166 587.4 329 88.4
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 9.7e-166 587.0 328 88.4
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.3e-165 586.6 326 89.0
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.6e-165 586.3 326 88.7
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.6e-165 586.3 326 88.7
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.2e-165 585.9 333 87.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 2.2e-165 585.9 326 88.7
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 2.8e-165 585.5 326 88.3
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 2.8e-165 585.5 329 88.4
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 3.7e-165 585.1 326 88.3
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 6.3e-165 584.3 364 81.9
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 8.2e-165 583.9 360 81.7
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 8.2e-165 583.9 358 81.3
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 8.2e-165 583.9 329 88.1
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.1e-164 583.6 329 87.8
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.4e-164 583.2 330 88.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.8e-164 582.8 331 87.6
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.8e-164 582.8 331 87.3
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.1e-164 582.0 326 88.0
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 3.1e-164 582.0 345 85.2
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 6.9e-164 580.9 348 83.3
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 9.0e-164 580.5 342 85.1
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.5e-163 579.7 352 83.0
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.5e-163 579.7 348 84.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.6e-163 578.9 348 83.0
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 3.4e-163 578.6 358 81.8
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 4.5e-163 578.2 357 81.5
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 5.9e-163 577.8 342 83.9
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.0e-162 577.0 330 85.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.3e-162 576.6 353 82.4
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.3e-162 576.6 357 82.6
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-162 576.2 330 87.0
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.7e-162 576.2 330 87.0
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.7e-162 576.2 337 83.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.2e-162 575.9 354 82.2
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.2e-162 575.9 357 81.8
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 2.2e-162 575.9 347 82.4
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 3.8e-162 575.1 330 87.0
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 5.0e-162 574.7 330 87.6
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.0e-162 574.7 357 82.4
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 6.5e-162 574.3 352 82.7
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.1e-161 573.5 347 82.1
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.4e-161 573.2 348 81.0
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.5e-161 572.4 331 85.8
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 4.2e-161 571.6 342 82.5
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.6e-160 569.7 343 82.8
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.1e-160 569.3 329 86.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.1e-160 569.3 377 77.7
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 2.1e-160 569.3 340 83.8
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.7e-160 568.9 347 81.8
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 2.7e-160 568.9 343 83.1
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.6e-160 568.5 333 85.6
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.0e-159 567.0 346 82.1
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 5.1e-159 564.7 349 81.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.1e-159 564.7 345 81.7
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 5.1e-159 564.7 345 81.7
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 6.7e-159 564.3 345 81.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-158 562.4 349 80.8
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 3.3e-158 562.0 328 84.5
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 5.7e-158 561.2 347 79.8
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.3e-157 560.1 324 84.9
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 6.3e-157 557.8 331 84.3
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 8.2e-157 557.4 362 79.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.2e-157 557.4 331 84.3
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 8.2e-157 557.4 342 81.0
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.8e-156 556.2 331 83.7
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 4.1e-156 555.1 338 82.0
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-156 554.7 331 84.0
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-156 554.7 331 84.0
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 9.1e-156 553.9 348 79.9
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.6e-155 552.4 349 80.5
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.6e-155 552.4 326 83.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-155 552.0 331 83.4
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 5.9e-155 551.2 342 81.0
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.0e-154 550.4 349 79.1
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 3.8e-154 548.5 337 83.1
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 3.8e-154 548.5 340 81.8
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 5.0e-154 548.1 348 80.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.5e-153 545.8 348 79.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 3.2e-153 545.4 338 80.5
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 4.2e-153 545.0 377 74.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 7.2e-153 544.3 340 80.3
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.7e-152 542.3 301 89.0
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.6e-152 542.0 342 81.3
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.4e-151 540.0 346 78.3
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.4e-151 540.0 370 75.4
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.9e-151 538.5 345 77.7
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.3e-150 535.4 341 80.1
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.7e-149 533.1 325 80.0
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.7e-149 531.9 364 75.3
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 4.8e-149 531.6 328 79.9
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 7.7e-147 524.2 411 67.2
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.7e-144 515.8 297 85.9
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.0e-142 509.6 393 69.0
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 8.2e-141 504.2 331 77.9
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.2e-139 500.4 347 73.2
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.6e-139 500.0 360 72.5
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.0e-138 497.3 339 70.5
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 4.2e-137 491.9 360 69.7
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 5.5e-137 491.5 285 85.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.2e-136 490.3 342 73.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 2.7e-131 472.6 345 71.3
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.8e-130 468.8 359 69.9
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.5e-129 466.1 272 87.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.2e-129 465.3 324 69.4
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.8e-127 458.0 324 68.8
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 4.4e-126 455.3 322 69.3
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 7.5e-126 454.5 324 69.4
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.7e-125 453.4 324 69.1
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.7e-122 443.4 286 80.1
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-121 439.9 367 64.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.5e-121 439.5 257 84.8
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.5e-121 439.5 323 67.2
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 9.5e-121 437.6 302 70.9
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 3.7e-117 425.6 323 64.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.4e-116 423.7 325 63.7
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.5e-115 419.1 329 67.8
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-114 416.8 351 64.4
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 6.6e-114 414.8 258 81.4
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 4.7e-112 408.7 241 84.6
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 4.9e-109 398.7 240 84.6
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 7.0e-108 394.8 238 83.2
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-107 394.0 370 57.6
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-106 390.6 273 73.3
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.1e-105 387.5 274 68.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.5e-105 386.3 300 63.7
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.2e-104 384.0 359 59.9
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.5e-102 377.1 238 76.9
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.2e-100 369.4 233 78.5
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.7e-99 366.3 247 75.7
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.1e-97 360.9 320 57.2
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 9.6e-89 331.3 199 83.4
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.4e-77 292.0 285 59.3
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-75 287.7 203 76.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-62 244.6 320 44.4
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 7.6e-62 241.9 164 72.0
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 9.3e-60 235.0 161 68.9
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.3e-56 222.2 359 42.9
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.4e-55 220.3 138 79.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.4e-55 220.3 253 53.4
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.6e-51 207.6 126 79.4
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 2.5e-49 200.3 120 80.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.7e-45 187.6 236 41.1
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.3e-40 171.4 208 46.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.7e-40 169.9 104 77.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.6e-38 163.7 97 76.3
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-35 154.8 97 75.3
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.7e-35 153.7 96 74.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 4.7e-35 152.9 88 79.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 7.9e-35 152.1 96 82.3
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.7e-32 144.4 110 71.8
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.6e-30 137.9 76 86.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.7e-29 134.4 189 50.3
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.2e-29 134.0 85 80.0
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 4.7e-27 126.3 82 69.5
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.7e-24 116.7 58 89.7
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.0e-21 106.3 73 61.6
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 4.2e-20 103.2 83 65.1
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 9.4e-20 102.1 73 64.4
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 3.6e-19 100.1 73 75.3
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 4.0e-18 96.7 62 77.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.4e-15 87.4 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.6e-06 58.2 50 58.0


User provided reference genes

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