Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.4e-213 745.3 405 100.0
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 3.0e-192 675.2 433 85.9
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 6.8e-176 620.9 406 82.0
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.2e-132 477.2 410 64.9
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 6.9e-128 461.5 406 65.3
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 3.1e-120 436.0 406 61.1
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 6.9e-120 434.9 406 61.6
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 1.3e-115 420.6 415 60.0
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 3.0e-115 419.5 411 59.6
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 9.6e-114 414.5 406 58.6
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 8.2e-113 411.4 406 58.1
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 5.3e-112 408.7 378 61.6
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.3e-107 394.0 408 57.8
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 2.5e-106 389.8 410 56.6
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 6.9e-104 381.7 370 58.1
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 5.0e-102 375.6 382 56.5
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.1e-101 374.4 405 54.8
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 2.5e-101 373.2 467 51.8
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.2e-101 372.9 467 51.6
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.7e-100 369.8 466 50.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 5.7e-98 362.1 406 55.2
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 9.7e-98 361.3 412 52.9
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 4.8e-97 359.0 420 52.6
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-95 354.4 458 50.9
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.2e-95 354.4 415 53.5
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 5.9e-95 352.1 336 59.2
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.0e-94 351.3 461 50.3
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 8.5e-94 348.2 406 52.2
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.5e-93 346.7 463 50.3
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 5.5e-93 345.5 413 50.4
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.2e-92 344.4 380 53.7
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 9.7e-90 334.7 390 52.6
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.7e-89 334.0 418 51.7
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 7.7e-87 325.1 419 50.6
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 2.5e-85 320.1 416 47.6
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 9.4e-85 318.2 442 46.6
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.6e-84 316.2 409 52.1
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.4e-83 314.3 342 53.5
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.3e-83 313.5 287 61.3
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 3.0e-83 313.2 458 44.1
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.1e-82 311.2 416 48.1
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 4.4e-82 309.3 403 50.1
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 3.1e-80 303.1 437 44.9
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.1e-80 303.1 310 58.7
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 4.1e-80 302.8 429 46.4
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 7.0e-80 302.0 428 47.0
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 3.5e-79 299.7 461 44.5
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 4.5e-79 299.3 462 43.5
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.7e-78 297.4 417 46.0
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.8e-78 296.2 385 46.8
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 7.2e-77 292.0 419 47.5
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 2.0e-74 283.9 263 62.7
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 3.7e-73 279.6 406 45.1
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 6.3e-73 278.9 473 42.3
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 8.2e-73 278.5 384 49.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.4e-72 276.9 334 51.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 3.1e-72 276.6 435 44.6
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 4.1e-72 276.2 398 46.0
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.0e-72 275.4 408 44.9
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 3.5e-71 273.1 456 41.0
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 7.7e-71 271.9 460 42.2
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 7.7e-71 271.9 382 47.1
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.7e-70 270.8 399 46.6
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 2.2e-70 270.4 419 44.4
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 5.5e-69 265.8 253 56.5
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 5.5e-69 265.8 430 44.9
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.7e-68 263.5 458 40.4
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 2.3e-67 260.4 379 45.6
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 3.0e-67 260.0 472 39.2
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 1.2e-66 258.1 231 62.3
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-66 258.1 281 55.5
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-66 256.9 212 70.8
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.3e-65 254.6 470 38.9
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 3.7e-65 253.1 405 45.7
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.4e-64 251.1 382 46.1
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 3.1e-64 250.0 425 41.4
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.1e-64 250.0 419 41.5
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.2e-63 248.1 349 49.3
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.0e-63 247.3 259 56.0
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 5.9e-63 245.7 440 39.3
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 7.7e-63 245.4 410 42.7
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 6.6e-62 242.3 366 47.8
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.5e-61 241.1 439 39.6
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.9e-61 240.7 416 40.1
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 3.3e-61 240.0 404 42.1
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 3.0e-59 233.4 434 40.8
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 6.8e-59 232.3 259 50.6
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.2e-58 231.5 402 41.0
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.5e-58 231.1 371 39.6
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 3.4e-58 229.9 413 38.5
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 4.9e-57 226.1 415 39.0
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.1e-56 224.9 396 39.6
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 3.1e-56 223.4 432 38.0
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 3.1e-56 223.4 420 37.9
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 5.4e-56 222.6 235 58.3
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 5.4e-56 222.6 268 52.2
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.3e-54 218.0 379 41.4
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-53 214.9 289 48.4
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.5e-53 214.5 421 39.0
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 4.3e-53 213.0 459 39.0
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 1.0e-51 208.4 448 37.1
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 6.8e-51 205.7 355 41.4
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 9.8e-50 201.8 469 36.0
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 8.3e-49 198.7 252 51.6
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.6e-44 183.3 254 45.7
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.1e-43 180.3 336 38.7
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.1e-43 180.3 195 55.9
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.5e-42 177.9 432 36.6
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.1e-37 161.8 339 36.6
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 6.2e-36 156.0 317 38.5
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.2e-34 151.8 312 38.5
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.7e-33 147.9 142 62.7
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.0e-30 138.7 115 61.7
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.8e-27 127.9 257 38.5
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 3.1e-27 127.1 254 40.6
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.5e-26 124.8 301 35.2
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 2.2e-25 120.9 148 49.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.3e-22 111.7 405 30.4
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 6.6e-22 109.4 90 56.7
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.7e-22 109.0 134 49.3
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 8.7e-22 109.0 102 64.7
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 6.9e-19 99.4 118 52.5
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 9.0e-19 99.0 80 72.5
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.2e-18 98.6 109 48.6
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.2e-17 94.4 74 55.4
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-16 90.9 71 77.5
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 9.3e-16 89.0 79 68.4
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.7e-14 84.7 69 50.7
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.5e-13 81.6 70 54.3
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 7.3e-13 79.3 71 52.1
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 4.8e-12 76.6 123 42.3
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.4e-11 75.1 54 68.5
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.0e-10 71.2 126 36.5
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 7.6e-10 69.3 127 37.8


User provided reference genes

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