Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.0e-84 315.1 153 100.0
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.2e-82 308.9 153 98.0
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 3.4e-80 301.6 151 95.4
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 4.5e-80 301.2 151 96.7
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 5.9e-80 300.8 151 96.7
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 5.9e-80 300.8 151 96.0
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.0e-79 300.1 151 96.0
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.0e-79 300.1 151 96.0
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.7e-79 299.3 151 95.4
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 2.2e-79 298.9 151 94.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 2.9e-79 298.5 151 95.4
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 151 95.4
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 151 95.4
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.9e-79 298.5 151 95.4
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.0e-79 297.7 151 94.7
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.5e-79 297.4 151 92.7
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 6.5e-79 297.4 153 93.5
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 153 94.8
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 153 94.8
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.4e-78 296.2 153 93.5
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.4e-78 296.2 148 96.6
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.4e-78 296.2 148 96.6
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 95.3
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.5e-78 295.4 150 92.7
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.5e-78 295.4 149 95.3
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.2e-78 295.0 148 95.9
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 5.5e-78 294.3 149 94.6
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 5.5e-78 294.3 149 94.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 148 95.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 148 95.9
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 5.5e-78 294.3 154 92.2
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 9.4e-78 293.5 149 94.6
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 9.4e-78 293.5 148 95.3
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 9.4e-78 293.5 151 93.4
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 9.4e-78 293.5 151 93.4
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 9.4e-78 293.5 148 93.9
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 9.4e-78 293.5 152 93.4
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 94.6
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.2e-77 293.1 149 94.6
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.6e-77 292.7 148 94.6
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 148 93.9
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 151 93.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.7e-77 292.0 151 94.0
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 2.7e-77 292.0 153 91.5
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 2.7e-77 292.0 149 94.0
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.7e-77 292.0 149 94.0
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 2.7e-77 292.0 149 94.0
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 94.0
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 94.0
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.6e-77 291.2 148 93.2
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 4.6e-77 291.2 151 94.0
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 7.9e-77 290.4 153 90.8
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.0e-76 290.0 149 93.3
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 1.0e-76 290.0 148 93.2
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 150 93.3
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 150 93.3
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 92.1
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 92.1
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 1.4e-76 289.7 151 91.4
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.4e-76 289.7 149 93.3
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 149 94.0
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.3e-76 288.9 156 90.4
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 2.3e-76 288.9 149 92.6
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 154 90.9
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 2.3e-76 288.9 151 92.1
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 3.0e-76 288.5 155 90.3
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.0e-76 288.5 147 93.2
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.9e-76 288.1 151 93.4
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 5.1e-76 287.7 151 91.4
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 6.7e-76 287.3 149 91.3
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 93.4
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 92.1
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 90.1
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 90.1
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 90.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 90.1
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 90.1
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 8.8e-76 287.0 149 91.9
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 90.1
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 8.8e-76 287.0 147 92.5
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 8.8e-76 287.0 147 92.5
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 92.1
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.5e-75 286.2 153 92.2
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.0e-75 285.8 151 89.4
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.5e-75 285.4 148 89.9
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 92.5
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 5.7e-75 284.3 153 90.8
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 7.4e-75 283.9 144 93.8
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.3e-74 283.1 150 92.7
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 150 92.7
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 88.8
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.2e-74 282.3 148 90.5
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 90.5
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 91.9
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 91.9
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.1e-73 280.0 144 92.4
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.4e-73 279.6 150 92.0
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-73 279.6 150 92.0
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.4e-73 279.6 150 88.7
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.4e-73 279.6 147 89.8
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.4e-73 278.9 151 89.4
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.9
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 6.9e-73 277.3 148 90.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.2e-72 276.6 151 88.7
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 89.9
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 89.9
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.0e-72 275.8 148 89.2
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 2.0e-72 275.8 151 88.7
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.5e-72 274.6 148 90.5
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.3e-71 273.1 144 90.3
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.2e-71 272.3 158 87.3
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 5.0e-71 271.2 144 89.6
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.4e-70 269.6 134 96.3
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 7.2e-70 267.3 140 90.7
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 4.7e-69 264.6 143 88.8
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.5e-67 259.6 138 91.3
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.3e-67 258.5 128 96.1
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 5.7e-67 257.7 133 91.7
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 5.7e-67 257.7 133 91.7
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 5.7e-67 257.7 128 96.1
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 4.8e-66 254.6 132 93.9
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.1e-65 253.4 131 93.9
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.1e-65 253.4 133 91.0
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.1e-65 253.4 137 89.1
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 3.1e-65 251.9 153 82.4
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 3.1e-65 251.9 129 91.5
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.1e-65 251.5 140 87.1
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 4.1e-65 251.5 127 92.1
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 4.1e-65 251.5 130 90.8
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 5.3e-65 251.1 133 89.5
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 7.0e-65 250.8 150 82.0
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 7.0e-65 250.8 145 82.1
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.0e-65 250.8 129 91.5
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 9.1e-65 250.4 146 84.9
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.6e-64 249.6 131 92.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 2.0e-64 249.2 127 92.1
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.6e-64 248.8 128 92.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 4.5e-64 248.1 128 90.6
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 5.9e-64 247.7 128 90.6
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 7.7e-64 247.3 148 83.8
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.0e-63 246.9 129 91.5
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 4.2e-62 241.5 140 83.6
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 5.7e-59 231.1 143 71.3
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.3e-58 229.9 148 73.0
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.2e-58 229.2 144 70.8
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 9.1e-57 223.8 154 73.4
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 4.7e-53 211.5 187 61.0
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 8.8e-52 207.2 116 86.2
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.0e-51 206.1 145 72.4
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 9.8e-51 203.8 125 76.8
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 5.4e-49 198.0 103 93.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 9.1e-49 197.2 103 92.2
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 9.1e-49 197.2 103 93.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 4.2e-46 188.3 114 75.4
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.0e-44 181.8 87 98.9
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 6.3e-42 174.5 115 81.7
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.1e-38 163.7 79 94.9
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 3.6e-37 158.7 84 85.7
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 3.0e-36 155.6 81 92.6
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.4e-35 151.8 148 58.8
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-32 143.7 73 95.9
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.1e-30 137.1 73 84.9
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.1e-28 129.0 71 90.1
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.9e-28 127.5 79 78.5
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.6e-27 125.9 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.3e-26 123.6 71 87.3
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 1.7e-15 86.7 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.9e-14 83.2 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.8e-12 76.6 74 54.1


User provided reference genes

Program Settings