Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 2411.3 1254 100.0
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 2181.8 1256 89.8
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1625.1 1294 67.5
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1458.0 1312 62.7
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1391.3 1259 60.8
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1382.1 1349 59.8
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1328.2 1299 57.0
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1309.7 1218 58.9
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1262.3 1260 57.2
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1259.2 1352 53.3
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1217.6 1243 55.2
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1199.1 1344 52.3
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1192.2 1332 54.0
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 0.0e+00 1187.9 1353 51.1
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 1183.3 1273 52.0
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1169.8 1331 53.1
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 1169.5 1297 51.3
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1167.5 1342 52.5
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1164.1 1327 53.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1159.4 1277 54.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 1154.4 1286 51.5
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1151.0 1352 51.0
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 0.0e+00 1145.6 1344 50.3
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 0.0e+00 1145.2 1314 51.8
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 0.0e+00 1137.5 1370 50.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 0.0e+00 1135.6 1288 51.4
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1122.5 1260 51.8
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 0.0e+00 1120.1 1310 53.3
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 0.0e+00 1119.4 1322 51.2
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1113.6 1323 51.7
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 0.0e+00 1105.1 1322 50.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 0.0e+00 1104.4 1271 51.1
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 0.0e+00 1099.7 1279 52.6
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.4e-311 1072.0 1305 49.7
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.4e-311 1072.0 1269 50.4
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 8.5e-310 1067.4 1343 49.1
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.1e-309 1067.0 1322 50.8
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.4e-309 1063.9 1319 49.2
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 4.5e-303 1045.0 1303 50.0
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 5.9e-303 1044.6 1330 50.5
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 8.5e-302 1040.8 1352 47.5
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 5.5e-301 1038.1 1329 48.5
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.6e-300 1035.4 1279 49.6
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.3e-299 1032.7 1281 49.5
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 2.2e-294 1016.1 1210 50.0
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 2.3e-291 1006.1 1318 48.6
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 1.2e-290 1003.8 1299 46.2
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.2e-285 985.3 1352 46.4
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 8.0e-284 981.1 1314 47.3
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.8e-283 979.9 1243 47.1
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.4e-280 970.3 1200 49.3
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 2.3e-275 953.0 1198 48.3
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 4.9e-273 945.3 1221 48.0
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.0e-267 927.5 1253 47.6
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 1.5e-266 923.7 1298 46.3
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.3e-262 909.8 1255 46.5
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 5.8e-258 895.2 1236 45.3
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.8e-252 876.3 1256 43.3
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.7e-247 859.8 926 53.9
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.8e-244 849.7 1058 48.4
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 2.2e-241 840.1 1401 41.5
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.4e-232 810.1 887 51.1
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 6.0e-231 805.4 1370 39.1
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.8e-227 793.9 1319 42.7
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 3.0e-222 776.5 1288 39.9
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 7.6e-218 761.9 1276 39.9
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 4.2e-216 756.1 1289 40.8
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.7e-215 753.4 752 55.7
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 4.6e-215 752.7 1235 40.7
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.3e-214 751.1 1308 38.6
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.1e-212 743.8 1287 40.0
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 6.2e-212 742.3 1276 39.5
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 4.0e-211 739.6 1279 40.7
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.0e-211 739.6 1280 40.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 5.5e-208 729.2 1210 40.2
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 1.2e-202 711.4 1276 39.2
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 5.5e-200 702.6 1251 38.4
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 9.4e-200 701.8 1315 38.5
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 4.3e-197 693.0 1237 39.1
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 4.3e-197 693.0 1277 41.0
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 7.7e-194 682.2 1258 37.7
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 7.9e-191 672.2 1305 37.9
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.1e-179 633.3 1184 36.3
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 7.7e-178 629.0 1223 36.0
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.1e-175 620.9 1194 37.1
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 2.1e-175 620.9 1277 35.9
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.0e-174 618.6 751 49.4
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.2e-159 568.5 667 51.7
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 6.0e-138 496.5 1421 31.4
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.9e-137 493.8 949 36.9
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.1e-128 465.7 922 37.2
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.5e-128 465.3 555 51.0
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 9.9e-125 452.6 491 54.0
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 9.3e-115 419.5 1150 29.8
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.3e-88 331.3 1500 25.9
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.5e-85 320.9 342 56.1
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.6e-82 312.4 733 31.9
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 3.3e-80 304.7 429 47.3
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.7e-79 302.4 302 55.0
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 3.1e-78 298.1 1659 24.7
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 7.2e-67 260.4 1403 25.6
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.0e-65 256.5 337 44.5
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 3.0e-65 255.0 207 69.6
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 9.8e-56 223.4 425 36.9
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 8.5e-52 210.3 1243 24.6
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.2e-45 189.9 221 47.1
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 3.8e-44 184.9 105 80.0
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.8e-41 176.0 1109 22.6
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.2e-37 163.3 228 43.4
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 4.4e-32 144.8 243 41.6
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 1.2e-29 136.7 179 43.0
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 1.2e-26 126.7 176 42.6
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 6.2e-26 124.4 110 54.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.9e-23 115.5 88 60.2
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 6.4e-23 114.4 107 53.3
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 1.1e-22 113.6 251 33.5
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 6.0e-21 107.8 145 49.0
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.9e-19 102.8 125 48.0
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.8e-17 94.4 239 36.0
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.0e-16 92.8 96 52.1
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 4.9e-15 88.2 175 35.4
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 8.4e-15 87.4 188 36.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.1e-14 85.1 61 65.6
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 9.2e-14 84.0 155 36.8
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 4.6e-13 81.6 160 34.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.9e-12 78.6 76 47.4
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 6.6e-12 77.8 76 46.1
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 1.9e-11 76.3 74 47.3
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 4.3e-11 75.1 53 60.4
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.2e-10 73.6 112 61.6
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.6e-10 73.2 146 30.1
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 8.1e-10 70.9 97 46.4
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 1.2e-08 67.0 90 35.6
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 1.3e-07 63.5 53 49.1
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 2.9e-07 62.4 111 32.4
arahy.Tifrunner.gnm1.ann1.NPA3T0 Arachis hypogaea HOM05D004261 ORTHO05D021484 5.4e-06 58.2 52 44.2
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 9.3e-06 57.4 44 56.8


User provided reference genes

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