Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 1.5e-80 302.8 153 100.0
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 7.7e-64 247.3 153 86.3
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 2.7e-45 185.7 151 64.2
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 1.0e-44 183.7 151 63.6
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 1.8e-44 183.0 151 62.9
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 6.8e-44 181.0 151 64.9
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 3.4e-43 178.7 127 69.3
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 5.7e-43 177.9 153 62.1
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 7.5e-43 177.6 125 68.8
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.7e-42 176.4 131 70.2
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 2.8e-42 175.6 122 70.5
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 4.9e-42 174.9 153 60.8
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 8.3e-42 174.1 159 62.3
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 1.8e-41 172.9 156 62.8
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 2.4e-41 172.6 153 59.5
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 3.1e-41 172.2 153 59.5
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 3.1e-41 172.2 153 60.8
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 5.4e-41 171.4 127 66.1
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.2e-40 170.2 153 58.8
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 2.0e-40 169.5 157 59.2
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 2.0e-40 169.5 130 66.2
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 4.5e-40 168.3 122 65.6
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 4.5e-40 168.3 137 63.5
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 5.9e-40 167.9 127 62.2
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 5.9e-40 167.9 153 58.2
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 7.7e-40 167.5 149 60.4
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.0e-39 167.2 152 59.9
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 1.0e-39 167.2 122 65.6
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 1.3e-39 166.8 153 58.2
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 2.3e-39 166.0 155 62.6
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 2.3e-39 166.0 129 63.6
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 2.9e-39 165.6 155 60.6
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.9e-39 165.6 152 59.2
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 3.8e-39 165.2 157 59.9
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 6.6e-39 164.5 137 62.0
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 6.6e-39 164.5 141 59.6
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 8.6e-39 164.1 161 56.5
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 1.1e-38 163.7 152 58.6
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 1.1e-38 163.7 160 55.0
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.5e-38 163.3 137 60.6
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.5e-38 163.3 131 64.9
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 1.9e-38 162.9 152 57.9
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 2.5e-38 162.5 138 65.2
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 3.3e-38 162.2 152 58.6
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 3.3e-38 162.2 152 58.6
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 3.3e-38 162.2 134 63.4
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 3.3e-38 162.2 137 62.0
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 3.3e-38 162.2 134 63.4
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 4.3e-38 161.8 131 61.1
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 4.3e-38 161.8 153 57.5
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 4.3e-38 161.8 140 63.6
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 4.3e-38 161.8 122 67.2
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 4.3e-38 161.8 152 58.6
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 5.6e-38 161.4 152 57.9
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 5.6e-38 161.4 157 58.0
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 5.6e-38 161.4 169 55.6
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 5.6e-38 161.4 120 65.0
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 7.3e-38 161.0 134 60.4
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 9.5e-38 160.6 138 63.8
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 1.2e-37 160.2 138 64.5
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 1.6e-37 159.8 155 58.1
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.1e-37 159.5 126 64.3
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 2.8e-37 159.1 136 59.6
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 2.8e-37 159.1 138 58.7
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 3.6e-37 158.7 126 61.9
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 3.6e-37 158.7 124 64.5
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 2.3e-36 156.0 124 64.5
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 3.0e-36 155.6 126 65.9
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 3.0e-36 155.6 126 62.7
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 4.0e-36 155.2 151 57.0
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.5e-35 153.3 165 52.1
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.5e-35 153.3 165 52.1
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.0e-35 152.9 146 61.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 2.6e-35 152.5 138 59.4
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 4.4e-35 151.8 155 54.2
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 1.7e-34 149.8 120 58.3
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 4.9e-34 148.3 125 59.2
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 6.4e-34 147.9 128 58.6
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 8.3e-34 147.5 142 57.7
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.1e-33 147.1 125 59.2
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 2.4e-33 146.0 120 58.3
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.4e-33 146.0 145 54.5
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 3.2e-33 145.6 122 59.0
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 1.2e-32 143.7 84 81.0
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.2e-32 143.7 164 49.4
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 1.6e-32 143.3 174 47.1
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 2.7e-32 142.5 100 73.0
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.7e-32 142.5 157 49.7
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.7e-32 142.5 155 50.3
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 5.9e-32 141.4 156 48.1
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 7.8e-32 141.0 145 53.1
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 1.0e-31 140.6 132 58.3
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 3.6e-29 132.1 127 61.4
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.2e-27 127.1 123 59.3
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 5.8e-27 124.8 117 51.3
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 2.9e-26 122.5 110 60.0
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 1.1e-25 120.6 117 55.6
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 3.2e-25 119.0 118 49.2
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 4.1e-25 118.6 97 64.9
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 1.2e-24 117.1 122 50.0
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.2e-24 117.1 165 40.6
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 2.0e-24 116.3 99 58.6
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 1.0e-23 114.0 95 62.1
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 3.0e-23 112.5 127 51.2
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 8.6e-23 110.9 101 58.4
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.1e-22 110.5 101 57.4
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.1e-22 110.5 101 57.4
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 6.2e-21 104.8 104 56.7
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 2.3e-20 102.8 96 59.4
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 6.8e-20 101.3 102 55.9
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 6.4e-18 94.7 92 55.4
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 6.4e-18 94.7 101 46.5
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 1.6e-16 90.1 105 40.0
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 3.5e-16 89.0 94 54.3
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 6.6e-15 84.7 95 48.4
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 6.6e-15 84.7 80 56.2
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.6e-13 80.1 95 46.3
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.1e-13 79.7 71 54.9
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 8.1e-13 77.8 137 35.0
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 8.4e-10 67.8 111 29.7
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 7.8e-08 61.2 82 47.6
EL10Ac2g03070 Beta vulgaris HOM05D000615 ORTHO05D000447 1.0e-07 60.8 33 78.8


User provided reference genes

Program Settings