Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 4.4e-92 341.3 173 100.0
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 1.3e-91 339.7 173 99.4
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 4.6e-81 304.7 173 87.9
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 2.2e-75 285.8 173 82.7
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 7.1e-74 280.8 174 81.6
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 2.7e-73 278.9 173 79.8
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 4.6e-73 278.1 173 79.2
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 1.3e-72 276.6 173 79.8
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 1.3e-72 276.6 173 79.8
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 1.3e-72 276.6 173 79.8
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 3.9e-72 275.0 175 81.7
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 5.1e-72 274.6 174 79.3
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 1.9e-71 272.7 166 86.1
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 2.5e-71 272.3 173 77.5
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 2.5e-71 272.3 174 78.7
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 5.6e-71 271.2 173 77.5
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 5.6e-71 271.2 173 77.5
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 5.6e-71 271.2 174 81.0
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 7.3e-71 270.8 178 78.1
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 1.6e-70 269.6 173 78.6
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 6.2e-70 267.7 173 77.5
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 6.2e-70 267.7 174 81.0
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 2.4e-69 265.8 173 76.9
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 2.4e-69 265.8 175 81.1
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 4.0e-69 265.0 173 77.5
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 5.3e-69 264.6 174 80.5
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 5.3e-69 264.6 174 80.5
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 5.3e-69 264.6 174 80.5
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 5.3e-69 264.6 172 78.5
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 1.2e-68 263.5 175 76.6
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.6e-68 262.3 174 79.9
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 3.4e-68 261.9 173 76.3
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 5.8e-68 261.2 174 77.0
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 5.8e-68 261.2 173 75.1
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 7.6e-68 260.8 174 75.9
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.7e-67 259.6 175 76.6
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 1.7e-67 259.6 174 75.9
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 1.7e-67 259.6 173 77.5
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 2.2e-67 259.2 173 74.6
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 4.9e-67 258.1 173 74.6
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 4.9e-67 258.1 174 77.0
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 8.4e-67 257.3 175 77.7
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 1.9e-66 256.1 175 76.6
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 2.4e-66 255.8 176 75.6
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 3.2e-66 255.4 175 76.6
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 5.4e-66 254.6 176 79.0
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.2e-65 253.4 160 86.2
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 4.6e-65 251.5 175 76.6
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 4.6e-65 251.5 176 76.1
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 7.9e-65 250.8 174 74.1
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 7.9e-65 250.8 173 74.0
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 2.3e-64 249.2 173 74.0
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 3.0e-64 248.8 174 76.4
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 3.9e-64 248.4 173 74.0
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 1.5e-63 246.5 173 74.6
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 1.5e-63 246.5 174 72.4
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 2.5e-63 245.7 175 74.3
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 3.3e-63 245.4 174 73.6
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 5.6e-63 244.6 184 73.9
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 9.6e-63 243.8 173 72.3
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 9.6e-63 243.8 173 72.8
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 4.8e-62 241.5 175 76.6
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 6.2e-62 241.1 175 74.3
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 4.0e-61 238.4 175 73.7
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 4.0e-61 238.4 176 71.6
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 4.0e-61 238.4 173 71.7
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 5.3e-61 238.0 175 74.9
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-60 236.1 175 73.1
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-60 236.1 175 73.1
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 2.0e-60 236.1 175 73.1
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 4.5e-60 235.0 175 72.6
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 4.5e-60 235.0 175 72.6
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 4.5e-60 235.0 175 72.6
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 5.8e-60 234.6 175 71.4
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 7.6e-60 234.2 175 72.6
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 1.0e-59 233.8 176 71.0
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-59 233.4 175 72.0
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 3.8e-59 231.9 175 71.4
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 3.8e-59 231.9 175 71.4
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 4.9e-59 231.5 176 70.5
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 8.4e-59 230.7 175 72.0
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 8.4e-59 230.7 153 79.1
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 2.5e-58 229.2 175 70.3
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 4.2e-58 228.4 168 70.2
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 1.5e-55 219.9 138 79.0
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.6e-54 216.5 151 76.2
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.6e-54 216.5 174 66.1
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 6.2e-54 214.5 153 75.8
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 1.4e-53 213.4 174 64.9
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 4.5e-52 208.4 169 67.5
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 5.0e-51 204.9 176 61.9
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 8.4e-51 204.1 177 62.7
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 2.3e-48 196.1 140 68.6
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 8.7e-48 194.1 178 57.3
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 1.3e-46 190.3 167 61.1
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 1.2e-44 183.7 151 64.2
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 1.2e-44 183.7 138 74.6
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 2.6e-44 182.6 166 63.9
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 1.2e-41 173.7 144 69.4
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 2.1e-41 172.9 137 70.8
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 2.1e-41 172.9 173 55.5
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 3.6e-41 172.2 137 70.8
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 7.9e-41 171.0 178 53.9
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 3.9e-40 168.7 117 77.8
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 2.4e-37 159.5 114 77.2
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 1.5e-36 156.8 155 61.3
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 3.6e-33 145.6 106 73.6
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 4.8e-30 135.2 108 67.6
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 2.6e-28 129.4 112 66.1
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 6.5e-27 124.8 105 71.4
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 9.4e-26 120.9 105 69.5
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 2.3e-24 116.3 106 67.9
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 3.0e-24 115.9 173 38.7
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 5.2e-24 115.2 106 66.0
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 2.2e-22 109.8 165 41.8
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 8.2e-22 107.8 97 69.1
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 7.7e-20 101.3 66 86.4
Sabra19G0131600 Salix brachista HOM05D005631 ORTHO05D006765 5.0e-19 98.6 94 64.9
Sabra04G0079400 Salix brachista HOM05D005631 ORTHO05D006765 8.5e-19 97.8 79 73.4
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 1.5e-18 97.1 71 77.5
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 1.2e-17 94.0 68 73.5
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 1.5e-15 87.0 77 62.3
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 1.3e-14 84.0 82 61.0
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 1.8e-13 80.1 107 49.5
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 2.4e-13 79.7 122 47.5
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 2.4e-13 79.7 45 82.2
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 7.0e-13 78.2 61 70.5
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 9.1e-13 77.8 76 65.8
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 2.0e-12 76.6 61 68.9
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-12 76.6 61 68.9
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 7.7e-12 74.7 61 68.9
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 7.7e-12 74.7 61 67.2
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 1.0e-11 74.3 100 49.0
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 1.7e-11 73.6 62 69.4
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 3.8e-11 72.4 100 49.0
Sabra10G0082900 Salix brachista HOM05D005631 ORTHO05D006765 6.5e-11 71.6 50 78.0
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 1.1e-10 70.9 61 68.9
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 3.2e-10 69.3 60 65.0
Sabra06G0178600 Salix brachista HOM05D005631 ORTHO05D006765 9.4e-10 67.8 49 79.6
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 4.7e-09 65.5 141 36.9
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 1.5e-07 60.5 43 76.7
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 2.0e-07 60.1 33 93.9
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 5.7e-07 58.5 43 74.4
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 2.2e-06 56.6 43 69.8
CBR_g4734 Chara braunii HOM05D005631 ORTHO05D006765 3.7e-06 55.8 101 44.6
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 6.3e-06 55.1 48 62.5


User provided reference genes

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