Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1971.4 989 100.0
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1858.2 989 94.9
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1778.5 989 89.2
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1767.3 989 88.3
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1755.7 989 88.2
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1754.6 987 88.2
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1751.1 989 88.1
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1748.4 989 87.3
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1746.5 989 87.0
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1741.1 989 87.1
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1736.1 989 87.0
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1731.5 989 86.5
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1731.1 989 86.5
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1731.1 989 86.8
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1730.7 990 86.8
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1714.9 989 85.6
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1711.0 989 85.6
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1709.9 990 85.5
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1705.3 988 85.5
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1705.3 989 85.5
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1704.9 990 85.4
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1703.0 989 85.1
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1696.0 1013 83.3
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1693.3 990 85.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1691.8 1013 83.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1691.8 989 85.0
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1687.9 990 84.2
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 990 84.1
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 991 84.3
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1684.1 989 83.2
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 989 84.0
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1682.9 990 83.5
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 989 83.8
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1680.6 989 83.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1677.5 991 83.2
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1677.5 990 83.8
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1676.4 999 83.5
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1675.2 1013 82.3
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1673.3 990 82.7
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1673.3 989 82.7
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1672.9 990 83.5
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1670.6 989 83.5
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1670.2 985 83.0
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1668.3 1084 78.1
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1667.5 989 82.4
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1665.2 1001 82.0
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1663.7 991 82.7
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1662.9 1015 81.9
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1662.5 989 82.1
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1659.4 997 82.2
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1656.3 990 82.9
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1656.0 994 82.8
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1654.8 994 82.4
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1654.4 990 82.8
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1653.6 1006 82.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1653.3 993 82.0
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1653.3 989 81.6
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1651.0 998 82.7
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1650.2 1027 81.2
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1644.4 989 81.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1641.3 988 82.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1640.9 991 82.2
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1639.0 1004 80.7
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1637.5 997 81.7
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1636.7 991 82.4
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 989 83.2
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1631.3 1004 80.6
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1630.2 976 82.4
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 988 81.7
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1627.8 1077 76.9
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1627.5 991 81.4
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1622.4 1006 80.1
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1615.1 981 81.4
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1607.0 987 80.7
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1605.9 990 81.0
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1601.6 990 80.6
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1597.4 936 84.4
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1589.7 1024 78.7
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1585.9 1039 76.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1585.1 1020 78.5
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1576.6 990 78.9
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1575.8 990 79.2
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1571.6 941 83.0
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1569.3 969 80.3
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1560.8 928 84.5
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1543.5 987 77.8
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1530.8 980 76.5
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1495.7 990 76.7
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1482.2 990 75.8
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1476.8 848 85.8
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1474.9 896 80.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1449.9 978 73.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1418.7 818 86.7
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1410.2 995 71.8
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1381.7 789 86.9
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1376.3 785 86.5
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1347.8 792 84.3
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1347.8 793 84.4
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1347.0 772 87.0
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1335.5 856 78.6
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1317.8 953 70.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1308.5 983 70.5
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1306.2 760 85.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1281.5 764 83.8
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1207.6 821 76.6
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1193.3 982 61.1
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1183.3 988 60.7
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1171.4 762 79.0
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.0e-297 1026.9 642 80.8
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 9.7e-293 1010.4 981 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 4.8e-292 1008.1 790 63.3
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.8e-292 1008.1 611 80.7
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 2.0e-290 1002.7 555 89.4
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.2e-287 993.4 665 75.0
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.0e-254 882.5 574 76.1
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 4.9e-252 875.2 519 83.2
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 4.1e-251 872.1 611 69.7
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 2.0e-242 843.2 518 82.0
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 1.5e-205 720.7 418 82.3
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.8e-166 590.9 336 85.7
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.8e-153 547.7 337 80.7
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.7e-144 516.2 282 89.0
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 6.0e-125 453.0 1077 31.3
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-119 435.3 249 85.9
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 1.2e-104 385.6 230 78.7
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 7.6e-104 382.9 1272 27.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-103 382.1 268 72.8
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.1e-102 379.0 1028 28.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 6.0e-101 373.2 231 75.3
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 4.2e-94 350.5 204 81.4
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 9.3e-94 349.4 207 81.6
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 2.9e-87 327.8 231 68.8
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 4.2e-78 297.4 178 79.2
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.1e-77 295.0 191 77.0
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.0e-76 292.7 305 51.1
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 2.6e-72 278.1 441 38.8
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-70 271.9 209 67.5
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.2e-69 269.2 153 80.4
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 9.1e-57 226.5 127 81.1
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 8.5e-55 219.9 153 68.6
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.7e-50 205.7 135 72.6
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 4.8e-42 177.6 121 73.6
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 4.1e-41 174.5 163 59.5
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.4e-41 174.1 174 59.8
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.0e-36 158.3 113 67.3
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.0e-36 157.9 106 71.7
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.2e-36 157.5 94 79.8
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 7.0e-33 147.1 116 64.7
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.1e-30 139.8 73 95.9
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 6.8e-28 130.6 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.2e-27 129.8 127 59.8
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.8e-27 126.7 81 70.4
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.2e-26 125.6 100 63.0
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 6.3e-26 124.0 75 78.7
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.2e-25 121.7 75 78.7
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.7e-23 115.9 92 64.1
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.9e-23 115.2 91 64.8
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-22 112.5 80 80.0
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 2.9e-18 98.6 52 84.6
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.1e-17 94.7 54 81.5
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.3e-14 85.1 94 47.9
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 3.3e-14 85.1 74 58.1
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 4.3e-14 84.7 160 36.9
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.3e-12 79.0 230 23.9
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.8e-12 77.4 58 60.3
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.1e-06 60.1 31 80.6
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.5e-06 59.7 47 63.8


User provided reference genes

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