Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 3.3e-56 221.9 144 100.0
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 3.0e-41 172.2 144 78.5
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 5.0e-41 171.4 142 70.4
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.5e-40 169.9 138 81.2
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 1.6e-39 166.4 138 80.4
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.1e-38 163.7 138 79.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.3e-38 162.5 138 79.0
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 8.9e-38 160.6 138 77.5
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.1e-35 153.7 85 84.7
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.1e-35 151.8 134 78.4
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.1e-35 151.8 134 78.4
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 5.4e-35 151.4 136 64.7
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 2.7e-34 149.1 136 75.0
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 3.5e-34 148.7 130 76.2
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.5e-34 148.7 141 71.6
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 4.6e-34 148.3 141 75.2
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.7e-33 146.4 140 75.0
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.5e-32 143.3 127 76.4
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.9e-32 142.9 135 76.3
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.9e-32 142.9 138 73.9
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 3.3e-32 142.1 127 76.4
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 3.3e-32 142.1 142 47.9
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 7.3e-32 141.0 142 70.4
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 9.5e-32 140.6 131 67.2
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.2e-31 140.2 138 71.0
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.2e-31 140.2 142 69.7
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.6e-31 139.8 142 69.0
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 1.6e-31 139.8 138 72.5
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.6e-31 139.8 128 74.2
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.1e-31 139.4 140 69.3
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 2.1e-31 139.4 128 77.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.1e-31 139.4 142 70.4
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.8e-31 139.0 142 70.4
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 3.6e-31 138.7 128 73.4
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 4.7e-31 138.3 141 71.6
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 4.7e-31 138.3 138 66.7
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 4.7e-31 138.3 131 71.8
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 8.1e-31 137.5 140 68.6
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 8.1e-31 137.5 135 71.9
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.1e-30 137.1 132 70.5
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.8e-30 136.3 139 70.5
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 1.8e-30 136.3 128 74.2
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 2.4e-30 136.0 128 56.2
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 3.1e-30 135.6 139 72.7
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 3.1e-30 135.6 122 78.7
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.1e-30 135.6 142 69.0
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.5e-29 133.3 131 67.2
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.5e-29 133.3 138 58.0
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 2.6e-29 132.5 128 73.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.6e-29 132.5 128 71.9
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 2.6e-29 132.5 126 74.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 3.4e-29 132.1 129 73.6
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 3.4e-29 132.1 143 65.0
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 3.4e-29 132.1 128 72.7
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 4.4e-29 131.7 128 71.9
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 4.4e-29 131.7 137 67.9
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.8e-29 131.3 139 66.9
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.8e-29 131.3 134 67.9
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.8e-29 131.3 134 67.9
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.8e-29 131.3 134 67.9
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 9.9e-29 130.6 136 66.9
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.3e-28 130.2 121 76.0
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 2.9e-28 129.0 131 67.9
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.9e-28 129.0 130 64.6
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.8e-28 128.6 137 63.5
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 3.8e-28 128.6 137 66.4
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 4.9e-28 128.3 137 62.8
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 4.9e-28 128.3 128 73.4
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.1e-27 127.1 140 65.0
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.1e-27 127.1 136 65.4
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.1e-27 127.1 141 68.1
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.4e-27 126.7 78 67.9
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.4e-27 126.7 131 67.9
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.4e-27 126.7 127 70.9
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 2.4e-27 125.9 119 73.9
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 3.2e-27 125.6 127 66.1
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 3.2e-27 125.6 89 66.3
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 5.4e-27 124.8 127 70.1
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.1e-27 124.4 136 66.2
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.1e-27 124.4 136 66.2
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.2e-26 123.6 127 71.7
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 3.5e-26 122.1 127 68.5
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 6.0e-26 121.3 144 54.9
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.0e-25 120.6 127 66.9
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.7e-25 119.8 88 64.8
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 3.0e-25 119.0 131 66.4
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 8.7e-25 117.5 113 75.2
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 8.7e-25 117.5 116 54.3
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.5e-24 115.9 127 66.9
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 5.6e-24 114.8 128 44.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 1.2e-23 113.6 149 41.6
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.2e-23 113.6 148 40.5
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 2.4e-22 109.4 82 57.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.4e-22 109.4 137 57.7
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 2.4e-22 109.4 137 57.7
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 4.0e-22 108.6 124 62.1
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 4.0e-22 108.6 137 56.9
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 5.2e-22 108.2 137 56.9
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 1.2e-21 107.1 137 54.7
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.0e-21 106.3 132 57.6
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 7.6e-21 104.4 137 55.5
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.3e-20 103.6 101 80.2
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.1e-19 100.5 132 56.8
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.1e-19 100.5 132 56.8
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.1e-19 100.5 132 56.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.4e-19 100.1 125 56.8
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 4.2e-19 98.6 131 45.8
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 9.3e-19 97.4 96 67.7
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 9.3e-19 97.4 119 58.0
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.2e-18 97.1 121 63.6
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 2.7e-18 95.9 121 57.0
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 7.8e-18 94.4 95 78.9
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 4.3e-16 88.6 128 56.2
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 4.8e-15 85.1 105 56.2
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.4e-14 83.6 118 37.3
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.4e-14 83.6 118 37.3
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.4e-14 83.6 118 37.3
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 4.0e-14 82.0 122 35.2
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 4.0e-14 82.0 120 35.8
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 4.0e-14 82.0 120 35.8
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 1.2e-13 80.5 125 52.0
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 4.9e-12 75.1 58 56.9
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 1.1e-11 73.9 105 34.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.9e-11 73.2 118 32.2
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 2.4e-11 72.8 127 49.6
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 4.2e-11 72.0 58 50.0
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-09 67.0 103 48.5
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 8.7e-09 64.3 73 45.2
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 1.1e-08 63.9 119 32.8
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 1.3e-07 60.5 138 42.8
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.6e-07 60.1 65 92.3


User provided reference genes

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