Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 0.0e+00 1463.7 908 100.0
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 7.3e-271 937.6 842 69.0
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 5.8e-252 874.8 861 56.4
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.9e-244 848.2 853 55.6
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 2.3e-240 836.3 852 56.1
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 6.7e-240 834.7 855 54.7
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.1e-239 833.9 909 52.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 6.9e-237 824.7 860 52.7
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 5.5e-234 815.1 851 52.9
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.2e-233 813.9 851 53.1
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.4e-229 799.7 866 51.3
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 5.3e-229 798.5 860 52.2
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 3.4e-228 795.8 860 52.1
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 4.5e-228 795.4 847 51.4
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 5.9e-228 795.0 851 50.2
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.7e-228 794.7 853 51.8
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.3e-227 793.9 856 52.0
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.0e-227 792.0 867 51.2
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 2.5e-226 789.6 855 51.2
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 7.2e-226 788.1 851 49.7
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.2e-225 787.3 861 51.1
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.1e-225 786.6 856 51.2
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 3.6e-225 785.8 851 49.5
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.4e-223 778.9 856 51.3
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 7.4e-223 778.1 854 57.1
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 6.3e-222 775.0 848 51.1
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.0e-220 770.0 859 49.9
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 7.7e-220 768.1 857 51.5
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.7e-219 766.9 864 49.3
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 2.2e-219 766.5 848 50.4
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-218 763.8 848 50.2
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.9e-218 763.5 838 50.8
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 3.2e-218 762.7 851 48.5
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 5.5e-218 761.9 858 51.0
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 2.7e-217 759.6 850 54.7
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.7e-217 759.6 856 50.6
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.4e-216 757.3 875 49.5
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.8e-216 756.9 848 56.8
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 6.7e-216 755.0 854 56.6
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.3e-215 752.7 848 50.0
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.5e-215 751.5 848 49.8
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.8e-213 746.9 850 49.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.4e-213 746.5 866 49.7
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.1e-213 745.7 852 49.9
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.2e-212 744.2 853 49.1
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 4.2e-210 735.7 847 48.8
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.8e-208 730.3 629 61.5
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 5.7e-207 725.3 860 47.6
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.7e-206 723.8 885 48.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.7e-206 723.8 868 47.2
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.8e-206 722.2 874 51.4
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 2.4e-205 719.9 639 59.3
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 4.1e-205 719.2 853 47.9
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.7e-203 713.8 841 51.4
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.6e-201 707.2 852 48.4
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 8.0e-201 704.9 856 48.2
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 3.4e-199 699.5 886 48.5
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 5.7e-199 698.7 853 48.7
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.7e-198 696.0 856 46.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.3e-195 687.6 854 46.6
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 2.5e-194 683.3 864 46.9
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 4.7e-193 679.1 858 45.7
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.4e-192 677.6 856 51.2
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.2e-189 666.4 855 46.0
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 9.2e-189 664.8 885 45.3
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 6.2e-185 652.1 887 44.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 4.4e-183 646.0 862 45.4
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.4e-181 640.2 856 44.7
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 7.0e-181 638.6 867 45.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.0e-181 638.6 862 44.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.2e-181 638.3 862 44.5
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 6.6e-179 632.1 920 41.8
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.9e-178 630.6 848 44.7
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.9e-178 630.6 848 44.7
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.8e-177 626.7 851 43.7
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.8e-177 626.7 869 44.2
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.1e-176 623.2 858 43.7
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.4e-175 619.8 845 42.4
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 9.8e-175 618.2 848 41.2
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.9e-174 616.7 852 44.2
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.9e-174 615.9 859 44.4
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-173 614.8 848 43.6
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.1e-173 614.8 848 43.6
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.4e-173 614.4 848 43.5
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.9e-173 614.0 853 43.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 4.1e-173 612.8 845 43.7
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.6e-172 609.4 857 43.5
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 3.9e-171 606.3 845 43.2
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 5.1e-171 605.9 850 43.3
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.1e-171 605.9 524 62.2
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 8.6e-171 605.1 860 42.7
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.5e-170 604.4 852 42.7
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.6e-169 600.9 874 44.1
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.8e-168 595.5 855 43.3
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.0e-167 594.0 847 41.4
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.4e-167 593.2 847 46.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 5.8e-167 592.4 878 41.8
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.7e-166 590.9 841 41.6
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.4e-165 587.8 1310 33.4
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.4e-165 585.9 649 50.7
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.7e-158 564.3 862 41.6
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.8e-158 563.1 852 40.1
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 7.1e-157 558.9 618 51.6
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 7.3e-154 548.9 447 77.4
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 9.6e-154 548.5 864 38.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.6e-151 540.4 642 45.5
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.9e-141 507.7 594 50.2
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.8e-139 501.1 834 36.0
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.3e-136 489.6 857 42.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.2e-133 479.9 874 37.9
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.3e-131 474.9 463 54.0
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.3e-129 468.4 1354 29.4
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.1e-128 463.8 410 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.6e-124 450.3 862 35.0
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.7e-122 443.0 335 66.9
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.6e-121 441.4 868 36.8
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.3e-113 415.2 319 65.5
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.4e-112 411.8 430 51.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 4.7e-100 370.2 311 62.1
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 6.3e-97 359.8 602 38.4
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.6e-92 344.0 363 51.0
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.3e-89 335.5 650 36.2
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.7e-89 335.1 270 60.0
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 5.2e-83 313.5 811 32.2
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.2e-81 308.1 396 46.2
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 2.0e-79 301.6 389 46.5
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.5e-74 285.4 340 46.2
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 5.7e-74 283.5 302 51.0
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.4e-72 278.1 393 45.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.6e-70 270.0 491 35.2
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.5e-69 268.1 377 43.8
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 2.3e-67 261.5 182 68.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.4e-66 257.3 471 37.2
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.2e-63 249.2 469 35.2
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.6e-63 248.8 490 36.7
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 4.6e-63 247.3 1097 22.5
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 5.6e-61 240.4 195 79.0
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.4e-56 224.9 180 62.8
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.0e-46 191.4 466 35.2
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 9.6e-45 186.4 139 66.9
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 9.0e-43 179.9 357 33.9
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 2.3e-38 165.2 122 72.1
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.8e-36 158.3 118 63.6
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 5.3e-35 154.1 171 50.3
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 9.0e-35 153.3 136 55.9
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.6e-34 151.8 315 47.9
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.7e-33 149.1 269 34.9
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-31 142.5 100 70.0
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 6.7e-30 137.1 199 41.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 6.7e-30 137.1 148 52.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.9e-29 135.6 89 76.4
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 2.5e-29 135.2 88 71.6
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.1e-28 132.1 116 54.3
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 8.1e-28 130.2 421 27.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.4e-26 124.8 81 72.8
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.7e-25 122.5 80 76.2
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.2e-24 118.2 254 32.3
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 4.2e-24 117.9 86 66.3
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 7.1e-24 117.1 87 64.4
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 5.1e-22 110.9 118 54.2
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-21 109.8 121 52.1
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.5e-21 108.6 104 60.6
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.3e-21 107.8 95 55.8
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 4.8e-20 104.4 135 42.2
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.4e-19 102.8 93 50.5
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.4e-19 102.1 94 54.3
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 3.1e-19 101.7 121 49.6
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 2.1e-15 89.0 103 45.6
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.9e-15 87.0 98 42.9
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 4.3e-13 81.3 350 22.6
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 2.2e-12 79.0 625 21.4
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.7e-12 78.2 130 37.7
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.5e-10 71.2 51 64.7
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.9e-08 65.9 900 28.2
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.5e-08 65.5 86 44.2
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 9.4e-08 63.5 48 64.6
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 4.6e-07 61.2 37 73.0


User provided reference genes

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