Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 0.0e+00 1490.3 746 100.0
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.5e-277 959.5 747 66.7
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 5.8e-274 947.6 747 66.3
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 6.4e-273 944.1 748 65.5
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 3.1e-267 925.2 746 64.7
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 2.2e-265 919.1 748 65.0
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.1e-260 902.5 748 62.3
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 2.4e-259 899.0 750 64.1
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 5.8e-258 894.4 750 63.7
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 6.1e-255 884.4 749 61.7
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.3e-254 883.2 749 62.6
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 6.9e-251 870.9 713 65.8
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.7e-249 866.3 742 60.9
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.8e-249 865.1 742 61.6
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 2.5e-248 862.4 743 62.6
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 3.7e-244 848.6 670 66.4
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 5.3e-243 844.7 817 57.5
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 3.3e-237 825.5 748 59.9
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 7.0e-235 817.8 746 58.2
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 5.9e-234 814.7 755 58.7
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.7e-233 813.1 746 57.8
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.1e-227 793.9 614 67.6
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 1.3e-225 786.9 751 58.3
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 3.2e-224 782.3 748 55.2
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 4.2e-224 781.9 728 56.9
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 1.6e-223 780.0 755 54.6
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.4e-222 776.9 751 54.5
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 3.0e-222 775.8 750 54.3
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 1.2e-221 773.9 750 56.4
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.2e-221 773.9 747 54.5
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 7.5e-221 771.2 752 55.6
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 1.3e-220 770.4 749 57.0
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.7e-220 770.0 743 54.8
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.8e-220 768.5 750 56.3
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 8.3e-220 767.7 760 56.2
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 3.2e-216 755.7 746 53.4
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.6e-215 753.4 752 54.1
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 2.3e-214 749.6 750 56.1
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 7.0e-211 738.0 788 52.5
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 2.0e-210 736.5 752 53.1
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.0e-210 736.5 821 51.5
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 5.9e-210 734.9 790 52.3
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 3.8e-209 732.3 687 56.6
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 3.8e-209 732.3 754 52.7
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 3.8e-209 732.3 731 54.3
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 7.2e-208 728.0 753 52.3
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 6.1e-207 724.9 728 53.4
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 4.0e-206 722.2 734 52.9
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 5.7e-205 718.4 734 52.6
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 1.3e-204 717.2 752 52.4
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.7e-204 716.8 797 49.8
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 4.9e-204 715.3 752 51.6
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 4.9e-204 715.3 775 51.2
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.4e-203 713.8 732 52.9
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 9.2e-203 711.1 650 56.6
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 1.6e-202 710.3 749 51.3
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 3.5e-202 709.1 738 51.4
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 8.6e-201 704.5 747 54.2
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 5.6e-200 701.8 734 51.6
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.6e-199 700.3 412 85.9
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.3e-198 696.4 792 49.0
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 3.1e-198 696.0 752 51.7
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 7.3e-192 674.9 721 51.5
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.8e-190 670.2 763 49.5
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 2.3e-190 669.8 754 51.1
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 2.6e-189 666.4 750 49.2
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.4e-189 666.0 704 53.3
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.3e-188 664.1 753 50.6
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.4e-187 659.8 722 50.8
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 7.8e-186 654.8 750 48.8
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 8.6e-185 651.4 725 50.8
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 1.2e-183 647.5 725 50.5
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.6e-183 646.0 743 48.3
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 4.4e-181 639.0 759 47.0
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 6.4e-180 635.2 772 48.3
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 3.0e-177 626.3 719 47.6
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 5.2e-174 615.5 739 45.9
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 6.8e-174 615.1 761 47.2
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.1e-168 597.8 749 45.4
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 9.6e-168 594.7 741 44.4
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 3.9e-161 572.8 587 51.8
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.4e-150 537.0 690 43.3
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.0e-145 521.5 497 56.5
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 1.1e-144 518.1 540 53.3
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.4e-142 511.1 400 66.8
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 2.0e-141 507.3 528 50.8
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.5e-139 500.4 582 48.5
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 2.8e-135 486.9 588 48.0
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.4e-134 484.6 454 56.8
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 2.3e-129 467.2 451 55.4
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 6.9e-126 455.7 589 46.5
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.7e-122 443.7 746 38.2
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.5e-120 438.0 432 52.8
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 4.5e-117 426.4 371 60.4
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.8e-110 404.4 577 41.9
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 9.4e-107 392.1 351 55.8
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 3.0e-105 387.1 355 58.9
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 7.7e-101 372.5 353 55.5
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.9e-99 367.9 695 33.8
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 3.2e-99 367.1 823 31.5
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.6e-96 357.5 372 52.4
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.6e-96 357.5 277 65.3
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.8e-90 337.4 338 53.0
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 4.7e-90 336.7 874 30.0
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 6.1e-90 336.3 516 43.0
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 1.4e-86 325.1 256 65.6
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 3.6e-82 310.5 679 32.4
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.9e-78 298.1 256 60.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.9e-71 274.2 194 72.2
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.5e-67 261.9 265 55.1
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 6.0e-61 240.0 278 48.9
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.5e-59 235.3 727 30.1
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 5.6e-59 233.4 777 28.1
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 2.1e-58 231.5 908 23.3
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.9e-55 221.1 160 66.9
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 3.2e-54 217.6 273 45.1
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.5e-53 214.2 163 65.0
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.3e-52 212.2 160 65.6
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.5e-45 187.6 140 67.9
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.0e-28 132.9 120 54.2
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.3e-28 131.7 98 71.4
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 7.4e-27 126.7 164 42.7
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 4.5e-24 117.5 148 43.9
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 5.0e-15 87.4 179 34.6
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 2.5e-14 85.1 337 25.8
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 8.8e-12 76.6 169 33.7
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 9.7e-11 73.2 176 29.0
Rhsim03G0224400 Rhododendron simsii HOM05D005820 ORTHO05D007116 4.1e-09 67.8 112 42.9
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.3e-07 62.8 35 77.1
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 2.9e-07 61.6 59 55.9
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.9e-07 61.6 623 19.7


User provided reference genes

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