Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 3521.9 1816 100.0
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 3298.4 1853 92.4
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 3082.4 1823 88.2
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 3068.9 1826 87.7
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2918.3 1828 82.5
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2780.7 1873 78.4
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2761.1 1837 78.9
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2748.4 1855 78.3
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2733.7 1812 79.1
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2726.0 1807 78.7
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2696.4 1818 77.7
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2695.2 1835 77.3
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2691.4 1848 77.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2682.5 1843 77.1
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2674.0 1835 77.3
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2665.6 1833 76.5
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2657.1 1834 76.3
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2636.7 1811 76.5
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2632.4 1811 76.4
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2631.3 1805 76.8
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2627.8 1824 75.8
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2627.4 1820 75.6
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2620.9 1834 76.0
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2612.8 1833 75.0
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2608.6 1839 75.1
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2600.1 1830 74.4
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2573.9 1843 74.6
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2572.7 1826 73.9
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2562.7 1840 72.8
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2558.5 1847 74.4
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2547.7 1842 73.9
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2544.2 1847 74.0
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2536.5 1826 72.8
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2528.8 1892 70.9
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2528.1 1828 72.5
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2526.5 1827 72.9
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2525.7 1827 72.6
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2522.3 1847 74.0
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2521.1 1826 72.4
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2516.9 1826 71.6
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2515.0 1827 72.5
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2503.8 1823 72.6
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2488.4 1826 72.2
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2474.9 1830 71.5
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2472.2 1830 70.7
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2459.1 1908 69.8
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2454.9 1849 71.7
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2452.9 1857 71.4
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2449.5 1830 71.7
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2445.2 1834 71.8
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2444.8 1839 72.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2436.0 1838 70.6
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2436.0 1838 70.7
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2418.3 1841 70.5
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2418.3 1841 70.5
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2413.3 1789 72.4
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2411.7 1833 70.0
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2402.9 1808 70.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2376.3 1834 68.7
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2364.3 1824 69.3
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2358.6 1837 68.9
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2356.3 1827 70.1
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2349.3 1833 69.7
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2328.1 1832 69.1
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2325.1 1832 68.2
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2320.0 1830 67.2
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2295.8 1828 68.6
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2277.3 1838 66.9
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2273.8 1822 67.6
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2263.0 1830 66.6
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2251.5 1854 65.6
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2236.1 1830 65.8
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2232.6 1736 68.3
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2218.7 1836 65.4
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2215.7 1820 66.7
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2187.5 1814 66.1
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2155.2 1825 65.2
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2144.4 1825 65.4
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2138.6 1830 65.0
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2137.1 1831 64.9
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2136.7 1834 64.3
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2135.9 1826 65.1
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2117.4 1823 63.8
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2101.6 1827 64.5
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2093.2 1839 63.6
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2059.3 1766 63.8
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2036.2 1826 62.7
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2017.3 1864 59.9
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2008.8 1821 60.2
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2008.0 1817 61.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2007.3 1817 61.8
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2004.9 1814 61.9
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1991.1 1835 61.1
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1952.2 1821 60.0
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1900.2 1366 72.5
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1818.1 1844 55.7
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1767.3 1846 54.1
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1743.8 1492 64.5
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1701.4 1219 73.7
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1700.3 1337 67.6
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1695.2 1569 61.8
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1694.5 1328 67.5
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1676.8 1797 54.2
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1656.7 1718 55.2
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1574.3 1373 63.9
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1541.9 1304 63.4
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1508.8 1788 52.2
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1476.8 1186 65.9
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1359.7 1996 43.6
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1286.6 1205 62.4
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1263.8 1395 53.9
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1242.6 1841 42.5
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1218.4 998 66.1
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1192.6 1926 40.4
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1191.8 1143 58.4
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1171.8 1943 40.0
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1167.9 1975 38.8
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1138.6 867 70.1
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 6.4e-266 922.2 1478 41.6
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 5.2e-260 902.5 1381 43.3
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 3.8e-226 790.0 521 77.7
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 7.1e-225 785.8 630 64.0
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 5.7e-206 723.0 481 77.5
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 7.0e-196 689.5 466 76.0
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 3.5e-195 687.2 605 61.2
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.1e-188 663.7 488 73.4
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 2.6e-174 617.8 574 60.3
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 5.9e-171 606.7 622 54.5
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 3.8e-170 604.0 380 84.5
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 3.8e-170 604.0 487 69.8
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 5.5e-169 600.1 355 84.2
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.2e-158 565.8 361 78.1
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 9.2e-156 556.2 423 65.5
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 6.0e-155 553.5 336 85.7
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 4.0e-135 487.6 430 64.7
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.2e-133 481.9 391 69.8
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 2.4e-132 478.4 324 70.4
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 9.6e-129 466.5 402 61.9
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 5.8e-118 430.6 259 82.2
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 7.9e-115 420.2 266 88.3
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.3e-80 306.6 310 60.0
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.8e-80 305.4 306 59.2
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.8e-80 305.4 305 59.3
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.6e-54 219.9 143 77.6
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 4.4e-49 201.8 123 83.7
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 8.4e-24 117.9 70 88.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 3.2e-23 115.9 154 45.5
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 4.3e-20 105.5 71 76.1
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 4.0e-18 99.0 416 23.6
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.2e-17 97.4 70 70.0
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 4.2e-15 89.0 66 68.2
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 7.1e-15 88.2 70 64.3
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 6.0e-14 85.1 95 53.7
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 6.0e-14 85.1 206 29.6
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 1.0e-13 84.3 70 61.4
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 3.0e-13 82.8 70 60.0
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 7.3e-12 78.2 39 82.1
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.3e-11 77.4 34 94.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.3e-11 77.4 34 94.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.3e-11 77.4 34 94.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.3e-11 77.4 34 94.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.3e-11 77.4 34 94.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 5.8e-09 68.6 188 33.0
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 5.4e-07 62.0 37 81.1
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 2.7e-06 59.7 179 27.9
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 7.9e-06 58.2 72 54.2


User provided reference genes

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