Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 8.2e-103 377.1 196 100.0
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.6e-85 319.7 202 83.2
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 3.3e-75 285.4 196 74.5
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.6e-69 266.5 205 72.2
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.7e-68 263.1 200 70.0
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 2.5e-67 259.2 207 70.5
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 7.3e-67 257.7 165 83.6
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 1.2e-66 256.9 200 69.0
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.5e-64 250.0 214 65.9
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.5e-64 250.0 206 67.5
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 5.8e-64 248.1 206 67.0
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.3e-63 246.9 204 66.7
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 2.2e-63 246.1 206 64.6
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.9e-62 243.0 209 67.9
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 1.9e-62 243.0 203 66.0
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 2.4e-62 242.7 204 69.1
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 3.2e-62 242.3 206 66.5
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 3.2e-62 242.3 189 67.2
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 3.2e-62 242.3 206 67.0
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 4.1e-62 241.9 206 66.5
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 7.1e-62 241.1 211 64.0
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 9.2e-62 240.7 201 64.7
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 1.6e-61 240.0 204 64.2
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.6e-61 240.0 206 66.0
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 7.8e-61 237.7 204 65.2
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.7e-60 236.5 201 60.7
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 6.6e-60 234.6 199 66.8
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 1.1e-59 233.8 199 63.8
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.9e-59 233.0 203 64.5
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.9e-59 233.0 203 64.5
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.9e-59 233.0 172 68.6
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.5e-59 232.6 204 64.2
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 3.3e-59 232.3 201 62.7
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 3.3e-59 232.3 193 64.8
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 4.3e-59 231.9 207 61.8
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 2.1e-58 229.6 201 63.7
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 2.8e-58 229.2 224 58.0
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 3.6e-58 228.8 195 64.6
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 4.7e-58 228.4 167 70.7
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 4.7e-58 228.4 212 61.3
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 6.2e-58 228.0 213 58.2
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 8.1e-58 227.6 115 91.3
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 8.1e-58 227.6 215 57.7
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.1e-57 227.3 201 65.2
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.4e-57 226.9 207 63.3
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 2.4e-57 226.1 198 66.2
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 3.1e-57 225.7 114 91.2
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 4.0e-57 225.3 114 90.4
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 5.2e-57 224.9 207 58.9
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 6.8e-57 224.6 182 65.4
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 8.9e-57 224.2 200 61.5
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 8.9e-57 224.2 206 59.2
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 2.6e-56 222.6 200 60.5
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 3.4e-56 222.2 190 62.6
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 4.4e-56 221.9 184 65.8
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 5.8e-56 221.5 203 61.6
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 9.9e-56 220.7 200 60.5
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 9.9e-56 220.7 197 60.4
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 9.9e-56 220.7 197 60.4
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.3e-55 220.3 184 65.2
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.2e-55 219.5 184 64.7
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.2e-55 219.5 196 62.8
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 2.2e-55 219.5 200 59.0
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.9e-55 219.2 200 59.0
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 2.9e-55 219.2 170 68.8
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 6.4e-55 218.0 204 63.7
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.1e-54 217.2 214 64.0
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.9e-54 216.5 192 60.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.9e-54 216.5 197 59.4
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 3.2e-54 215.7 204 63.7
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.2e-54 215.3 151 76.2
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 4.2e-54 215.3 214 63.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 5.4e-54 214.9 214 63.1
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 7.1e-54 214.5 209 64.1
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 9.2e-54 214.2 198 57.6
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 9.2e-54 214.2 209 64.6
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 9.2e-54 214.2 196 59.2
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.2e-53 213.8 209 56.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.6e-53 213.4 184 61.4
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 6.0e-53 211.5 111 87.4
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 1.0e-52 210.7 186 60.8
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.3e-52 210.3 211 62.1
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 1.3e-52 210.3 112 85.7
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.3e-52 210.3 112 85.7
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.3e-52 210.3 112 85.7
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 1.3e-52 210.3 112 85.7
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.3e-52 210.3 172 65.1
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 8.7e-52 207.6 182 59.3
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 1.1e-51 207.2 218 60.6
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 3.3e-51 205.7 195 57.4
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 3.3e-51 205.7 200 59.5
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 7.3e-51 204.5 198 61.1
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 7.3e-51 204.5 116 81.0
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 1.2e-50 203.8 155 69.0
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 2.1e-50 203.0 116 79.3
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 2.1e-50 203.0 161 62.7
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 4.7e-50 201.8 196 54.1
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 3.1e-49 199.1 185 55.1
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 9.0e-49 197.6 203 53.7
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 5.8e-48 194.9 192 60.9
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 1.7e-47 193.4 204 54.9
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 1.7e-47 193.4 113 77.0
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 6.4e-47 191.4 113 76.1
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.4e-46 189.5 149 61.1
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 2.4e-46 189.5 178 56.2
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 3.2e-46 189.1 178 60.7
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 3.2e-46 189.1 157 62.4
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 4.2e-46 188.7 149 60.4
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 7.1e-46 188.0 167 55.7
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.7e-44 183.3 192 57.8
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 8.7e-44 181.0 179 55.9
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.1e-43 180.6 148 60.1
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 7.3e-43 177.9 112 71.4
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.1e-42 176.4 109 75.2
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.1e-41 174.1 109 74.3
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.4e-41 172.9 109 69.7
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.0e-41 172.2 108 71.3
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.2e-40 170.6 113 67.3
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 4.2e-38 162.2 133 60.2
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 4.6e-37 158.7 176 57.4
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 1.3e-36 157.1 149 62.4
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 9.3e-30 134.4 115 53.0
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.6e-29 133.7 150 48.7
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 4.6e-29 132.1 118 52.5
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 3.4e-24 115.9 108 50.9
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 5.8e-24 115.2 147 40.1
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.4e-14 84.0 93 45.2
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 3.8e-07 59.3 149 33.6


User provided reference genes

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