Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 2061.6 974 100.0
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1993.8 974 96.1
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1798.5 974 85.6
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1749.6 975 83.0
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1745.3 986 82.4
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1741.9 975 82.3
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1739.2 974 82.5
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1736.9 976 82.9
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1735.3 973 81.9
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1734.5 958 83.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1728.0 974 80.7
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1724.5 970 82.1
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1723.0 976 82.2
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1720.3 969 82.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1717.2 972 81.6
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1716.8 969 81.8
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1696.0 971 81.1
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1694.5 973 80.6
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1688.7 979 81.0
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1687.9 974 80.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1687.2 973 79.9
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1686.0 973 80.0
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1685.2 973 79.8
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1680.6 975 79.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1679.5 979 79.6
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1678.7 980 80.0
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1672.9 980 80.0
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1670.2 968 79.4
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1666.7 972 78.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1661.4 970 79.9
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1656.3 967 79.4
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1653.6 975 78.9
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1650.6 985 77.6
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1649.0 976 77.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1645.2 963 78.6
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1644.4 973 78.3
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1639.0 964 78.8
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1637.1 977 78.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1636.3 963 78.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1634.4 964 78.6
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1634.0 952 80.0
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1632.8 975 77.5
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1630.9 968 77.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1630.2 966 78.1
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1629.0 964 78.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1624.4 969 77.2
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1622.1 964 77.7
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1622.1 971 77.7
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1621.7 974 77.0
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1620.9 969 76.8
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1619.0 964 78.5
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1617.1 971 76.5
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1616.7 927 80.5
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 964 78.3
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1610.1 972 76.9
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 959 76.9
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1606.3 967 76.8
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1605.5 977 76.4
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1603.2 961 77.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1600.5 967 76.6
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1598.2 971 76.4
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1597.4 972 75.7
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1597.4 940 78.2
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 969 77.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1590.9 974 75.5
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 979 76.6
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1588.9 966 75.8
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1587.4 969 76.7
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1587.4 969 77.1
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1586.6 973 75.3
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 969 76.7
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1580.5 973 74.5
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 968 75.9
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1578.5 969 76.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1578.1 968 76.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1577.8 974 74.2
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1573.1 982 74.5
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1570.1 978 74.8
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1565.8 968 75.6
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 972 74.9
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1564.3 969 75.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1563.9 973 75.0
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 977 74.6
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1562.4 978 75.2
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1562.4 969 74.9
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 971 73.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 877 80.4
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1548.9 960 75.9
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1547.3 978 74.5
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1535.8 996 73.4
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1521.9 962 73.8
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1516.5 976 71.5
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 978 71.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1511.9 969 72.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 977 72.1
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 873 79.0
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 980 73.3
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1496.9 844 81.8
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 983 71.4
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1494.6 984 72.2
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1491.5 979 72.2
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1488.8 979 72.0
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1483.0 979 71.6
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1480.7 980 72.1
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1476.8 979 71.3
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 971 70.6
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1471.1 980 71.3
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 980 71.4
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 980 71.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 847 79.3
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1461.4 978 71.2
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1459.9 978 71.0
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1458.0 976 71.3
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1452.6 976 71.1
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1444.5 979 71.1
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 981 70.5
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1428.7 1002 66.9
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1382.1 975 68.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1362.8 982 65.7
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1357.4 761 80.9
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1345.9 980 67.7
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1331.2 763 80.9
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1329.7 979 66.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1281.9 852 71.0
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1267.7 785 75.2
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1264.6 781 75.3
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1236.1 786 72.9
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1079.3 978 54.7
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.7e-312 1074.7 686 73.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 3.7e-305 1051.6 960 54.7
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-290 1003.4 697 69.9
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.4e-281 971.1 963 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 5.6e-277 958.0 960 51.0
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.7e-270 934.1 563 76.7
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.0e-262 909.1 979 48.0
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 6.7e-238 828.2 845 50.8
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.5e-205 720.7 402 80.3
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 2.1e-143 514.2 404 63.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 5.0e-140 503.1 288 80.2
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.3e-121 441.0 374 61.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 6.7e-121 439.5 343 62.1
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 5.5e-107 393.3 215 84.7
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 8.6e-92 342.8 202 75.2
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 9.5e-91 339.3 192 81.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.3e-89 334.7 275 58.9
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.5e-77 294.3 159 83.6
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 6.8e-73 280.0 214 63.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 3.5e-69 267.7 143 85.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.0e-69 266.9 156 76.3
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 3.4e-64 251.1 643 29.9
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-57 229.6 147 72.8
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.3e-52 211.8 380 38.9
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 5.1e-44 184.1 96 85.4
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.5e-43 182.6 160 55.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 4.3e-43 181.0 150 60.7
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.4e-41 175.3 800 24.2
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 3.8e-39 167.9 148 55.4
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.6e-35 153.3 92 81.5
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 5.3e-33 147.5 93 71.0
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 7.6e-32 143.7 118 61.0
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.2e-31 142.1 116 56.0
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 9.3e-30 136.7 88 68.2
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-24 119.0 183 38.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 3.6e-21 108.2 183 36.6
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.5e-19 102.1 293 29.7
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.3e-18 99.8 119 46.2
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.7e-15 89.4 114 45.6
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.1e-13 82.4 71 57.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.0e-11 75.9 57 57.9
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.6e-11 75.5 47 76.6
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.2e-10 72.4 76 48.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.6e-08 65.5 78 46.2
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.0e-07 61.2 44 68.2


User provided reference genes

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