Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.2e-134 483.8 376 100.0
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 4.7e-131 471.9 378 98.1
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 3.5e-118 429.1 381 90.0
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.1e-110 403.3 383 83.3
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.7e-110 402.9 384 83.1
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 7.8e-110 401.4 221 85.5
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.7e-109 400.2 382 82.7
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 3.0e-109 399.4 398 83.7
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.9e-108 396.7 382 81.2
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.9e-108 396.7 376 75.8
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.5e-108 396.4 221 85.1
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 4.3e-108 395.6 378 84.1
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 4.3e-108 395.6 379 82.1
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 3.1e-106 389.4 221 83.7
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 4.0e-106 389.0 379 81.5
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.2e-105 387.5 376 82.7
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.0e-105 386.7 380 79.7
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 7.6e-105 384.8 222 86.9
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 7.6e-105 384.8 385 79.2
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 2.2e-104 383.3 375 86.1
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 3.8e-104 382.5 376 84.8
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 6.4e-104 381.7 388 79.4
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 8.4e-104 381.3 221 83.3
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.1e-103 380.9 380 79.7
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 1.1e-103 380.9 380 79.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 2.4e-103 379.8 383 82.8
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 2.4e-103 379.8 222 83.8
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 4.2e-103 379.0 387 80.1
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 5.4e-103 378.6 222 82.0
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 7.1e-103 378.3 222 81.5
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 9.3e-103 377.9 220 80.9
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 9.3e-103 377.9 222 84.2
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.1e-102 376.7 390 77.9
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.1e-102 376.7 390 77.9
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 2.1e-102 376.7 386 81.1
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.7e-102 376.3 385 76.9
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 3.5e-102 375.9 222 81.5
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 6.0e-102 375.2 222 82.0
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.0e-102 375.2 222 82.9
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 7.9e-102 374.8 389 78.4
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.0e-101 374.4 381 85.0
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.3e-101 374.0 217 85.3
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.3e-101 374.0 221 83.7
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 1.7e-101 373.6 411 78.3
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 2.3e-101 373.2 386 81.6
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.3e-101 373.2 402 78.6
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 3.0e-101 372.9 386 78.2
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 3.0e-101 372.9 377 85.1
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 3.9e-101 372.5 222 82.9
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 3.9e-101 372.5 381 82.4
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 5.1e-101 372.1 221 83.7
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 8.7e-101 371.3 391 80.6
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.1e-100 370.9 391 80.8
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.5e-100 370.5 386 77.2
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 1.9e-100 370.2 222 82.0
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.5e-100 369.8 394 78.7
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 3.3e-100 369.4 394 81.2
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 4.3e-100 369.0 221 84.2
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 7.3e-100 368.2 380 83.2
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 7.3e-100 368.2 382 83.2
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 7.3e-100 368.2 375 83.5
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 9.6e-100 367.9 222 81.1
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.3e-99 367.5 389 77.1
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 2.1e-99 366.7 224 82.1
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 2.8e-99 366.3 221 81.9
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 3.6e-99 365.9 219 81.7
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 8.1e-99 364.8 222 81.5
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.1e-98 364.4 218 79.4
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.1e-98 364.4 190 90.0
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.1e-98 364.4 221 80.5
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.4e-98 363.2 220 80.5
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 2.4e-98 363.2 220 80.5
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 2.4e-98 363.2 220 80.5
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 9.0e-98 361.3 234 75.6
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.2e-97 360.9 190 87.4
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 2.0e-97 360.1 190 87.4
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 2.0e-97 360.1 190 86.8
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 2.0e-97 360.1 188 88.8
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 5.8e-97 358.6 190 86.8
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 7.6e-97 358.2 190 86.8
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 7.6e-97 358.2 437 74.8
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.3e-96 357.5 381 78.7
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 2.9e-96 356.3 190 85.8
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 2.9e-96 356.3 190 88.9
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 4.9e-96 355.5 437 73.2
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 6.4e-96 355.1 190 87.4
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 8.4e-96 354.8 190 87.9
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 7.1e-95 351.7 401 62.1
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 1.2e-94 350.9 378 81.7
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 2.7e-94 349.7 190 85.8
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 4.6e-94 349.0 190 85.8
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.0e-93 347.8 393 53.2
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.0e-93 346.3 213 80.8
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.0e-93 346.3 213 80.8
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 3.9e-93 345.9 190 85.3
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 2.5e-92 343.2 213 76.5
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 4.3e-92 342.4 190 84.7
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 5.6e-92 342.0 197 82.7
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 9.6e-92 341.3 190 84.2
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.1e-90 336.3 213 77.5
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.2e-89 334.3 190 81.6
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 2.0e-89 333.6 191 80.6
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 2.0e-89 333.6 218 74.8
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 2.0e-89 333.6 211 76.8
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.6e-89 333.2 190 83.2
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 4.5e-89 332.4 389 76.3
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 3.5e-86 322.8 266 62.8
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 6.0e-86 322.0 222 71.6
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 7.9e-86 321.6 190 79.5
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.1e-84 317.8 167 89.2
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 7.4e-84 315.1 185 78.9
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 9.6e-84 314.7 167 87.4
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.1e-83 313.5 200 76.5
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 4.1e-82 309.3 190 76.3
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.3e-80 304.3 222 73.4
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.6e-78 295.8 386 44.8
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 9.4e-71 271.6 322 81.7
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 1.6e-70 270.8 190 62.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.3e-67 261.2 212 65.6
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 4.2e-55 219.5 185 54.6
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 1.8e-53 214.2 184 56.0
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 7.0e-50 202.2 192 53.1
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 1.9e-47 194.1 126 77.8
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 2.5e-47 193.7 97 92.8
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.6e-44 183.7 123 71.5
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.4e-42 176.0 94 86.2
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.7e-24 117.9 109 56.0
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 4.3e-23 113.2 85 70.6
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.6e-22 111.3 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.6e-22 111.3 70 71.4
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 3.9e-16 90.1 57 71.9
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 6.8e-13 79.3 53 60.4
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 1.5e-12 78.2 69 59.4
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 5.4e-10 69.7 42 76.2
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 1.6e-06 58.2 126 35.7
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 1.6e-06 58.2 53 60.4
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 3.6e-06 57.0 27 92.6
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 3.6e-06 57.0 60 61.7


User provided reference genes

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