Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 3.4e-272 941.0 467 100.0
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.4e-238 829.3 608 71.1
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.5e-232 809.3 467 83.7
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.5e-222 776.2 460 81.3
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 7.2e-222 773.9 461 79.4
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 1.4e-220 769.6 460 80.4
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 4.0e-220 768.1 462 80.5
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.8e-217 759.2 460 80.0
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 3.1e-217 758.4 460 79.8
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.3e-217 757.7 463 79.0
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 5.3e-217 757.7 454 80.6
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 9.1e-217 756.9 459 78.9
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.6e-216 756.1 465 79.1
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 7.7e-216 753.8 424 84.2
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 1.7e-215 752.7 461 78.1
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 3.8e-215 751.5 459 79.3
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 5.0e-215 751.1 460 79.1
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 5.0e-215 751.1 460 79.1
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 8.5e-215 750.4 458 78.8
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.5e-214 749.6 457 77.0
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.9e-214 749.2 455 80.0
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 4.2e-214 748.0 459 79.3
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.6e-213 746.1 459 78.9
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.7e-213 745.3 454 78.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 3.6e-213 745.0 487 74.9
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.4e-212 743.0 456 77.6
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 5.2e-212 741.1 455 79.6
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 2.6e-211 738.8 461 77.0
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 3.4e-211 738.4 461 76.6
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 9.8e-211 736.9 465 77.2
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 2.2e-210 735.7 456 77.2
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 6.3e-210 734.2 449 77.7
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 3.1e-209 731.9 457 76.6
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 4.1e-209 731.5 456 76.5
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 4.1e-209 731.5 456 76.5
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.4e-209 731.1 455 79.1
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 5.4e-209 731.1 453 78.4
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 7.0e-209 730.7 461 77.4
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.6e-208 729.6 456 76.5
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 2.7e-208 728.8 461 75.9
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.7e-208 728.8 462 74.9
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 4.5e-208 728.0 463 76.2
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 5.9e-208 727.6 456 76.1
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 7.7e-208 727.2 449 77.1
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.0e-207 726.9 456 76.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 1.0e-207 726.9 447 78.1
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 1.3e-207 726.5 464 75.4
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.3e-207 725.7 455 76.5
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 2.3e-207 725.7 465 75.9
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 3.8e-207 724.9 460 75.2
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 3.8e-207 724.9 434 77.9
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 5.0e-207 724.5 456 75.9
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 8.6e-207 723.8 461 75.7
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.5e-206 723.0 453 75.5
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.9e-206 722.6 482 73.0
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 2.5e-206 722.2 456 75.2
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 7.2e-206 720.7 460 74.1
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.1e-205 719.2 461 73.5
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.1e-205 719.2 478 73.2
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 2.1e-205 719.2 454 77.1
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 2.8e-205 718.8 452 75.2
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 3.6e-205 718.4 454 75.3
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 8.0e-205 717.2 458 74.9
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 8.0e-205 717.2 494 72.5
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 8.0e-205 717.2 454 77.1
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.0e-204 716.8 490 72.2
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 2.3e-204 715.7 440 76.4
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.0e-204 715.3 433 77.6
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 5.2e-204 714.5 440 76.1
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.9e-204 713.8 460 74.3
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 2.0e-203 712.6 464 74.8
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 4.4e-203 711.4 461 73.8
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.3e-202 709.9 473 72.7
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 2.8e-202 708.8 465 72.5
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 1.4e-201 706.4 458 72.9
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 2.4e-201 705.7 464 75.0
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.4e-201 705.7 495 69.9
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.6e-200 703.0 424 79.2
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.0e-200 702.6 457 74.4
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.7e-200 702.2 455 74.7
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 2.7e-200 702.2 450 74.7
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.5e-200 701.8 455 76.3
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 7.8e-200 700.7 456 74.1
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.0e-199 700.3 550 64.9
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 2.9e-199 698.7 440 74.3
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.9e-198 696.0 515 67.6
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.9e-198 696.0 479 70.8
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 2.5e-198 695.7 462 72.7
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 7.3e-198 694.1 484 71.1
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 9.5e-198 693.7 458 73.4
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 5.4e-193 677.9 458 70.3
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.2e-192 676.8 459 70.8
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.0e-191 673.7 457 72.0
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 4.3e-190 668.3 443 73.4
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 8.0e-189 664.1 450 69.1
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 2.9e-186 655.6 454 68.9
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.9e-175 618.6 361 82.0
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 7.3e-174 614.4 379 77.8
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.1e-173 612.8 379 77.8
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 3.4e-171 605.5 460 63.7
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.2e-168 597.0 364 77.2
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.8e-164 583.2 380 72.9
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 7.6e-163 577.8 394 72.8
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 2.9e-154 549.3 459 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 6.7e-151 538.1 436 61.9
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.3e-149 533.9 472 58.7
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.3e-149 533.9 450 58.9
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 4.5e-147 525.4 462 56.9
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 1.8e-143 513.5 436 63.1
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.4e-140 503.8 443 58.5
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 6.7e-135 485.0 443 55.3
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 7.4e-134 481.5 278 80.9
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 1.2e-128 464.2 455 53.6
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 1.3e-125 454.1 282 75.2
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 4.5e-123 445.7 257 79.4
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.8e-109 399.8 252 73.8
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.6e-104 384.0 254 71.7
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 8.0e-104 381.7 520 44.6
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 3.1e-100 369.8 424 47.4
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.9e-97 360.5 249 73.1
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 3.0e-95 353.2 507 42.6
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 8.0e-88 328.6 460 40.2
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.7e-83 313.5 242 66.9
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 3.5e-83 313.2 249 65.9
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.7e-80 302.8 184 83.2
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 1.6e-75 287.7 240 61.7
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 5.8e-70 269.2 202 67.3
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.4e-68 264.6 154 79.9
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.4e-62 243.0 149 75.8
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.1e-60 236.5 172 68.0
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 7.8e-59 232.3 240 53.3
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 1.7e-58 231.1 152 74.3
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.1e-43 181.0 123 71.5
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.6e-43 179.9 111 78.4
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 5.1e-42 176.4 103 84.5
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 8.7e-42 175.6 118 71.2
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 1.6e-40 171.4 106 81.1
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.8e-40 170.6 108 75.9
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.2e-37 161.0 110 70.9
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 7.9e-35 152.5 91 81.3
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.5e-33 147.5 344 31.1
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 1.5e-30 138.3 100 65.0
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.5e-28 131.0 77 74.0
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 2.5e-25 120.9 108 60.2
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 2.6e-22 110.9 71 78.9
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 2.6e-22 110.9 71 78.9
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 2.6e-22 110.9 71 78.9
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.8e-18 98.2 97 52.6
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 6.7e-18 96.3 66 66.7
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 2.2e-16 91.3 68 63.2
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 1.5e-14 85.1 44 88.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.0e-14 84.7 303 27.1
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 7.9e-11 72.8 53 64.2
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 3.9e-10 70.5 42 73.8
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.0e-09 68.2 51 64.7
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.4e-09 66.2 37 83.8
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 7.4e-09 66.2 37 83.8
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 2.2e-08 64.7 37 81.1
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 3.7e-08 63.9 41 68.3
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 4.8e-08 63.5 89 43.8
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.1e-07 62.4 242 27.7
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.1e-07 62.4 200 30.0
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 1.1e-07 62.4 43 67.4
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 9.1e-07 59.3 65 52.3
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 9.1e-07 59.3 355 23.4
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.0e-06 58.2 209 27.8


User provided reference genes

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