Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.1e-263 912.9 537 100.0
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 3.5e-204 715.3 528 83.0
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 7.6e-191 671.0 547 78.2
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 1.1e-160 570.9 552 66.8
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 6.5e-158 561.6 558 65.2
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.0e-155 554.3 544 66.7
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 8.7e-155 551.2 570 65.3
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 6.3e-153 545.0 550 65.6
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.2e-150 536.6 548 64.1
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.1e-149 534.3 542 61.4
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 4.6e-148 528.9 544 57.9
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.0e-147 527.7 577 61.9
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 2.5e-146 523.1 536 61.8
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 4.8e-145 518.8 531 62.5
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 3.1e-144 516.2 540 61.7
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 3.1e-144 516.2 561 61.3
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 4.1e-144 515.8 566 61.8
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 5.3e-144 515.4 563 61.1
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 9.1e-144 514.6 552 60.7
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 5.9e-143 511.9 586 59.0
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.3e-142 510.8 548 60.9
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 3.8e-142 509.2 534 62.0
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.5e-142 508.4 549 58.5
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 3.2e-141 506.1 528 62.9
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.2e-141 506.1 533 61.9
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.5e-141 505.4 550 60.7
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.1e-140 503.4 554 59.4
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 6.1e-140 501.9 525 61.5
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 7.9e-140 501.5 533 59.7
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 2.3e-139 500.0 568 61.3
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 3.0e-139 499.6 527 62.6
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 3.9e-139 499.2 578 59.9
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 3.9e-139 499.2 531 61.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.5e-138 497.3 550 62.0
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.0e-138 496.9 526 62.2
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 4.4e-138 495.7 542 60.9
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.7e-138 494.6 543 59.7
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-137 494.2 541 61.6
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.2e-137 493.4 540 60.4
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 4.8e-137 492.3 569 60.5
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 6.3e-137 491.9 541 59.1
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 2.4e-136 490.0 540 59.8
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 2.4e-136 490.0 534 60.1
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 2.4e-136 490.0 532 58.5
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 2.4e-136 490.0 541 60.1
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.4e-136 490.0 539 61.6
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 3.1e-136 489.6 548 61.3
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 7.0e-136 488.4 543 61.0
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.2e-135 487.6 529 53.7
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.0e-135 486.9 541 60.3
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 4.5e-135 485.7 535 60.2
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 7.7e-135 485.0 521 62.0
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 7.7e-135 485.0 550 58.4
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 7.7e-135 485.0 548 59.5
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.7e-134 483.8 538 60.4
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 2.2e-134 483.4 547 58.9
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 2.2e-134 483.4 558 59.5
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 2.2e-134 483.4 534 59.2
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 2.5e-133 479.9 531 54.6
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 3.2e-133 479.6 535 59.6
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 5.5e-133 478.8 527 59.8
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.4e-131 474.2 527 59.6
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.4e-131 474.2 545 58.2
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 6.7e-131 471.9 569 55.5
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.5e-130 470.7 534 58.2
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 3.3e-130 469.5 571 57.1
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 9.7e-130 468.0 604 52.2
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 2.8e-129 466.5 547 59.2
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 3.7e-129 466.1 553 58.8
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.4e-128 464.2 553 58.8
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 5.3e-128 462.2 531 57.1
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 2.9e-126 456.4 534 58.1
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 6.5e-126 455.3 544 57.9
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.1e-125 454.5 572 54.2
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 1.5e-125 454.1 566 55.3
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 4.2e-125 452.6 574 57.1
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 4.2e-125 452.6 527 57.9
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 4.2e-125 452.6 541 54.5
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.2e-124 451.1 524 51.9
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.8e-123 447.2 524 57.3
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.5e-122 444.1 540 59.1
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.0e-122 443.7 521 56.8
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 2.0e-122 443.7 545 53.9
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.6e-122 443.4 552 54.2
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 5.7e-122 442.2 536 55.8
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.2e-121 440.3 553 55.9
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.8e-121 439.9 529 56.3
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 4.8e-121 439.1 560 51.2
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-120 438.0 519 58.8
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.4e-120 437.6 524 58.8
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 9.1e-120 434.9 528 57.0
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 2.0e-119 433.7 575 54.8
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 4.5e-119 432.6 542 54.1
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 7.7e-119 431.8 550 50.9
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 7.7e-119 431.8 613 53.0
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.0e-118 431.4 579 52.2
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 8.0e-116 421.8 522 50.8
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.4e-115 421.0 463 58.5
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.8e-115 420.6 563 51.9
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 6.3e-113 412.1 503 51.5
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 4.1e-112 409.5 524 48.5
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.9e-109 400.6 573 50.8
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 2.5e-109 400.2 530 51.7
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 3.4e-106 389.8 534 52.4
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 2.7e-103 380.2 531 52.9
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 4.6e-103 379.4 513 53.4
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.9e-101 374.0 532 52.1
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 4.3e-93 346.3 349 64.8
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.6e-92 343.2 290 67.6
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 3.2e-88 330.1 602 44.7
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.9e-85 320.9 521 45.5
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 2.6e-82 310.5 505 41.6
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 4.9e-81 306.2 558 42.8
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 3.5e-79 300.1 475 46.9
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 6.0e-79 299.3 455 45.1
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 1.2e-74 285.0 538 44.1
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 4.4e-74 283.1 541 37.5
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 7.8e-71 272.3 364 53.3
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 4.6e-63 246.5 168 76.2
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 9.6e-61 238.8 195 66.2
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.6e-60 238.0 213 65.3
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 1.4e-59 235.0 251 55.8
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.5e-53 214.9 365 44.9
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 5.3e-51 206.5 126 84.9
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.2e-50 205.3 382 46.1
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 5.8e-50 203.0 249 47.0
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 3.8e-49 200.3 244 53.7
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 2.7e-47 194.1 245 45.7
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-41 175.6 191 53.9
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-41 175.6 191 53.9
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 5.3e-35 153.3 237 39.7
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.6e-29 134.4 147 52.4
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.4e-29 133.7 103 70.9
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 9.7e-29 132.5 154 55.2
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 1.6e-23 115.2 187 50.3
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.3e-22 111.3 85 71.8
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.0e-17 95.9 252 31.7
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.3e-17 95.5 62 74.2
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 2.7e-15 87.8 73 69.9
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 8.0e-15 86.3 62 69.4
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 3.3e-13 80.9 77 50.6
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.4e-13 80.5 67 59.7
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 5.7e-13 80.1 58 69.0
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 9.7e-13 79.3 101 47.5
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 4.8e-12 77.0 57 75.4
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 7.0e-11 73.2 69 56.5
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.5e-09 66.2 70 51.4
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.2e-08 63.2 37 78.4
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 6.1e-07 60.1 67 53.7
MBI03_g15603_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.2e-06 57.0 84 41.7


User provided reference genes

Program Settings