Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 2872.8 1608 100.0
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 2555.8 1707 87.1
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1717.2 1645 64.7
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1644.0 1614 63.3
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1575.8 1606 61.6
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1573.1 1574 62.6
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1567.0 1623 59.2
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1546.9 1609 60.6
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1543.9 1638 58.2
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1541.9 1607 60.9
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1530.4 1610 60.6
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1503.8 1613 60.4
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1483.8 1606 59.7
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1470.7 1612 58.8
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1469.1 1606 59.4
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1461.8 1614 57.1
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1452.2 1620 56.7
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1415.6 1605 57.3
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1409.4 1622 57.8
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1405.6 1619 55.6
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1399.4 1619 55.8
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1398.3 1619 55.8
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1398.3 1619 55.7
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1395.2 1614 56.1
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1389.8 1609 56.4
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1373.6 1611 56.9
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1372.5 1616 55.6
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1369.8 1608 55.8
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1364.0 1610 55.8
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1360.1 1613 56.4
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1358.6 1621 54.3
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1358.6 1556 54.9
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1351.3 1621 55.0
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1350.5 1610 55.7
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1344.3 1608 55.0
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1343.2 1594 55.7
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1339.3 1611 55.5
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1337.8 1617 54.7
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1331.6 1176 69.0
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1322.8 1611 53.9
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1317.4 1609 54.6
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1303.5 1613 54.6
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1298.1 1608 54.5
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1284.6 1646 53.0
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1275.4 1618 51.9
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1272.7 1215 64.4
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1255.7 1202 64.7
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1251.5 1603 51.2
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1233.4 1584 52.7
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1229.2 1611 49.0
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1228.0 1034 70.6
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1209.1 1608 51.8
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1208.7 1603 52.2
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1201.8 1617 51.6
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1196.4 1616 50.6
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1182.2 1620 50.4
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1179.9 1568 49.4
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1174.5 1672 49.6
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1169.5 1629 49.8
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 0.0e+00 1167.1 1302 58.1
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1163.7 1073 66.7
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1160.2 1177 61.5
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1158.3 1599 49.0
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1148.3 1635 48.5
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1141.3 1637 49.2
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1133.6 1170 58.7
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1117.4 1136 62.1
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1111.7 1192 58.5
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1107.4 1138 63.5
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 2.2e-311 1072.8 1073 62.8
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 3.3e-311 1072.4 1209 57.3
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 5.8e-303 1045.0 775 74.7
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 1.1e-301 1040.8 1070 61.8
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 9.5e-298 1027.7 1080 58.9
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 5.2e-288 995.3 1154 55.7
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 2.1e-284 983.4 1036 61.7
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 1.3e-278 964.1 779 70.0
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 2.2e-278 963.4 1699 43.5
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.8e-264 917.1 773 69.3
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 2.7e-252 876.7 1544 42.9
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 5.2e-227 792.7 908 53.6
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 4.7e-220 769.6 1295 43.8
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 1.8e-208 731.1 1199 44.9
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 1.0e-174 619.0 703 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 2.7e-151 541.2 818 44.0
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.4e-146 524.2 554 57.4
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 6.9e-139 500.0 814 43.7
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 5.0e-129 467.2 929 40.5
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.1e-127 461.8 1153 33.5
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.8e-116 424.9 803 40.2
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 1.2e-87 329.7 814 36.9
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.6e-81 307.4 333 56.5
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 8.4e-60 237.3 549 35.7
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 7.4e-40 171.0 102 79.4
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 1.1e-38 167.2 511 30.3
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 1.3e-36 160.2 141 61.7
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 5.5e-35 154.8 196 49.0
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.3e-33 150.2 131 67.9
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-32 144.4 254 36.2
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.1e-30 140.6 296 38.2
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-25 120.9 111 59.5
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.6e-23 116.7 1299 22.3
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 2.8e-23 115.9 61 86.9
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.8e-22 113.2 205 42.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.7e-16 91.7 85 60.0
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 9.1e-14 84.3 97 49.5
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 7.7e-13 81.3 189 31.2
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 3.8e-12 79.0 57 61.4
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 8.8e-09 67.8 38 84.2
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.8e-07 62.8 37 75.7
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 8.2e-07 61.2 148 41.2
unitig_37.g12720 Utricularia gibba HOM05D001674 ORTHO05D008599 7.0e-06 58.2 186 32.3


User provided reference genes

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