Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1770.4 969 100.0
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1615.1 972 88.3
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1317.0 949 79.2
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1258.4 953 71.4
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1244.6 952 70.6
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1241.9 977 69.6
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1228.8 977 69.2
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1215.7 971 72.6
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1205.7 962 73.0
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1201.8 955 72.3
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1192.6 955 71.9
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1191.8 1050 64.1
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1187.9 958 66.5
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1177.9 952 72.7
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1171.4 973 65.8
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1171.0 971 66.1
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1164.8 972 65.5
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1162.1 952 71.6
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1160.2 962 70.8
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1159.8 958 66.3
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1159.8 966 68.1
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1158.7 955 68.0
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1158.3 958 67.1
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1158.3 949 65.6
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1147.5 967 69.5
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1147.1 966 69.2
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1147.1 948 65.2
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1144.4 963 69.3
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1143.6 959 65.6
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1143.6 980 64.5
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1136.7 977 67.6
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1135.6 957 64.3
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1134.4 982 66.5
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1134.4 971 68.1
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1134.0 973 65.1
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1133.6 976 67.3
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1132.9 971 66.9
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1132.5 952 65.1
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1131.7 957 64.5
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1131.3 971 67.6
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1130.9 954 68.2
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1130.9 982 64.2
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1127.5 980 67.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1126.3 976 67.1
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1124.8 974 64.6
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1122.5 965 63.8
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1122.1 957 65.2
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 0.0e+00 1120.5 958 68.4
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1119.8 964 69.5
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1118.2 976 61.1
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1117.4 952 68.1
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1117.1 950 63.8
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1110.5 971 67.7
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1109.4 956 64.2
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1108.6 976 67.2
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 0.0e+00 1108.2 959 68.8
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1107.8 996 61.9
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1102.8 954 67.7
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1099.0 959 67.9
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 0.0e+00 1095.9 996 60.9
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1092.0 955 64.2
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 0.0e+00 1082.0 967 62.2
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1075.5 985 61.1
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 2.5e-309 1065.4 999 60.5
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 9.5e-309 1063.5 959 62.4
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 9.5e-309 1063.5 955 60.1
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 2.1e-308 1062.4 958 62.1
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 2.3e-307 1058.9 967 65.1
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 1.2e-306 1056.6 966 66.1
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 1.2e-306 1056.6 969 65.3
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 2.0e-303 1045.8 972 64.9
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 3.8e-302 1041.6 993 58.7
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 3.6e-300 1035.0 1005 58.4
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 4.7e-300 1034.6 886 62.1
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 5.7e-298 1027.7 970 58.5
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 6.4e-297 1024.2 977 58.8
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 6.4e-297 1024.2 1008 57.8
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 4.0e-291 1005.0 950 60.6
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.1e-285 986.9 959 57.8
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 2.1e-284 982.6 959 57.6
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 2.9e-281 972.2 818 66.6
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.2e-279 966.8 958 60.6
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 5.1e-278 961.4 959 61.5
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.6e-276 956.4 954 61.6
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.6e-276 956.4 954 61.6
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 1.4e-275 953.4 959 61.2
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 8.9e-275 950.7 958 60.0
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 6.4e-273 944.5 953 61.0
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.1e-272 943.7 954 60.8
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 3.2e-272 942.2 953 60.9
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 3.2e-272 942.2 958 59.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 4.1e-272 941.8 951 60.8
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 4.1e-272 941.8 957 60.9
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.6e-271 939.9 961 59.8
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.6e-271 939.9 954 55.8
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.1e-269 933.7 978 59.1
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 4.3e-269 931.8 954 60.6
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 5.2e-267 924.9 979 54.4
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 3.1e-259 899.0 1007 51.5
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 1.4e-230 803.9 887 52.8
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.5e-229 800.4 775 56.6
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 1.6e-223 780.4 975 49.4
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 3.8e-185 652.9 839 47.1
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 1.9e-184 650.6 601 64.6
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.2e-175 621.3 976 46.3
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 1.7e-164 584.3 808 48.8
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 4.9e-148 529.6 508 58.5
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.2e-133 481.9 624 43.6
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.4e-131 474.9 468 56.6
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 1.0e-129 468.8 815 37.4
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 2.2e-92 344.7 777 32.2
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 1.2e-90 339.0 983 30.0
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.3e-87 328.9 364 53.6
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.0e-68 266.2 881 25.7
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 3.9e-68 264.2 513 38.4
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 1.9e-54 218.8 225 53.3
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 9.5e-51 206.5 226 50.0
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 2.8e-50 204.9 172 61.6
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 2.1e-26 125.6 77 79.2
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.2e-24 119.8 67 79.1
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 5.5e-22 110.9 90 60.0
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 7.1e-22 110.5 90 60.0
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 3.0e-20 105.1 67 77.6
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 7.4e-19 100.5 110 53.6
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 4.8e-18 97.8 90 57.8
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 6.2e-18 97.4 90 57.8
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 8.4e-15 87.0 158 37.3
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.3e-12 79.7 215 32.6
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 4.8e-10 71.2 37 89.2
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 3.4e-08 65.1 222 32.0
MBI15_g28715_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.9e-07 62.0 39 76.9
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 1.1e-06 60.1 53 58.5
MBI15_g26777_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.2e-06 58.5 40 72.5


User provided reference genes

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