Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.2e-305 1052.7 683 100.0
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.2e-257 893.3 686 89.1
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.1e-247 860.1 703 84.8
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 6.8e-245 850.9 683 86.4
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.1e-229 800.4 681 82.2
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.6e-220 769.2 683 76.3
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.2e-218 760.8 668 78.9
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.6e-217 760.0 676 76.8
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 3.0e-216 755.7 682 74.3
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.5e-215 753.4 678 76.1
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 7.3e-215 751.1 678 74.6
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.4e-213 746.9 672 79.2
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.7e-211 740.0 668 75.0
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.4e-210 736.1 678 75.5
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 2.4e-210 736.1 675 77.0
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 3.5e-209 732.3 665 77.3
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 6.0e-209 731.5 684 73.2
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 5.1e-208 728.4 684 74.4
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 4.3e-207 725.3 661 76.9
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.8e-206 722.6 680 77.5
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.8e-206 722.6 664 76.8
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.8e-206 722.6 662 72.7
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.4e-205 720.3 664 76.7
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.8e-205 719.9 677 76.5
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.4e-205 719.5 678 76.4
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.2e-204 717.2 677 76.2
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.8e-204 714.9 661 77.0
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 7.6e-204 714.5 666 76.6
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-202 710.7 664 69.9
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.9e-202 709.9 665 76.5
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.9e-202 709.9 661 73.7
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 7.1e-202 708.0 660 73.8
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 9.3e-202 707.6 660 72.0
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.6e-201 706.8 667 73.3
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.6e-201 706.8 682 72.4
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.7e-201 706.1 673 66.6
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 4.6e-201 705.3 660 73.0
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 7.9e-201 704.5 677 72.8
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.0e-200 704.1 677 71.5
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.0e-200 704.1 662 73.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.0e-200 704.1 668 75.7
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 5.1e-200 701.8 671 72.4
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.5e-199 700.3 666 76.1
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.5e-199 700.3 651 75.0
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.5e-199 700.3 659 77.8
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 3.3e-199 699.1 670 71.8
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 3.3e-199 699.1 690 67.7
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 7.4e-199 698.0 678 73.3
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 9.6e-199 697.6 688 67.3
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.3e-198 697.2 676 76.0
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.3e-198 697.2 678 71.2
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.6e-198 696.8 670 71.5
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.8e-197 693.3 669 72.3
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 2.4e-197 693.0 691 73.5
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.4e-197 693.0 677 75.2
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 5.3e-197 691.8 665 75.6
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.5e-196 690.3 666 69.7
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.6e-196 689.5 664 70.9
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 3.4e-196 689.1 669 74.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.7e-195 686.8 666 71.8
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 6.4e-195 684.9 669 74.3
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 8.4e-195 684.5 664 70.8
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 7.1e-194 681.4 660 74.1
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 7.1e-194 681.4 666 70.6
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 9.3e-194 681.0 666 70.4
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 9.3e-194 681.0 664 70.6
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-193 680.6 692 75.1
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.6e-193 680.2 665 74.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.7e-193 679.5 666 70.4
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.7e-193 679.5 656 74.1
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 4.6e-193 678.7 665 74.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-192 677.6 666 70.3
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.0e-192 677.6 666 70.3
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.8e-192 676.8 666 71.6
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.9e-191 673.3 658 71.1
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.9e-191 673.3 652 74.1
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.5e-191 672.9 658 70.7
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 9.6e-191 671.0 662 70.4
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.3e-190 670.6 661 75.2
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.1e-190 669.8 665 70.8
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 2.8e-190 669.5 679 69.5
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.8e-190 669.5 664 69.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.8e-190 669.5 664 71.7
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 6.2e-190 668.3 665 70.8
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.2e-190 667.9 658 70.2
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 3.1e-189 666.0 669 74.3
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 5.3e-189 665.2 658 69.8
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 6.9e-189 664.8 669 74.1
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 6.9e-189 664.8 625 74.2
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 3.4e-188 662.5 664 74.8
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 2.2e-187 659.8 561 79.1
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.2e-187 659.8 665 63.9
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.1e-186 657.5 656 70.1
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.1e-186 657.5 667 69.0
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.5e-186 656.4 661 69.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 2.5e-186 656.4 654 67.4
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.0e-184 651.0 710 61.8
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 3.3e-183 646.0 668 72.2
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 4.3e-183 645.6 557 72.5
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.8e-182 642.9 610 76.1
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.4e-181 639.8 661 68.1
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 1.6e-177 627.1 655 68.1
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.0e-176 624.4 558 74.9
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.7e-175 618.6 585 75.7
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 4.5e-172 609.0 662 63.7
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.7e-169 599.7 661 56.9
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 4.4e-167 592.4 665 63.8
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.3e-166 590.9 679 66.9
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 8.0e-161 571.6 533 80.9
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.5e-159 567.4 661 64.1
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 5.5e-154 548.9 533 74.9
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.2e-150 537.0 660 67.6
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 6.3e-150 535.4 605 63.5
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 3.2e-146 523.1 541 74.5
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.8e-144 517.3 672 54.8
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.1e-138 498.0 715 61.1
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 7.2e-138 495.4 646 53.6
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 8.0e-137 491.9 691 51.8
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.5e-135 487.6 532 70.5
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.0e-131 474.9 495 72.5
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 9.8e-127 458.4 544 60.7
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.2e-126 457.2 641 52.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.4e-109 401.4 515 58.1
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.2e-104 382.9 248 75.4
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 7.8e-100 369.0 259 71.4
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.7e-99 367.9 303 65.7
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.9e-98 364.4 305 65.6
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 6.2e-97 359.4 459 45.8
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.4e-96 357.5 486 64.6
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.4e-88 331.6 477 57.9
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 4.2e-85 320.1 225 82.2
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.3e-75 288.5 289 87.5
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.0e-71 274.6 296 53.7
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 2.7e-68 264.2 245 54.7
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 5.7e-66 256.5 215 80.5
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 4.8e-65 253.4 319 70.5
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.8e-64 251.5 213 62.0
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.4e-64 251.1 288 50.7
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.9e-61 241.5 310 49.7
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 5.0e-54 216.9 304 48.4
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-52 211.5 305 43.6
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 6.7e-51 206.5 138 71.7
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.3e-46 192.2 290 77.2
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 7.2e-45 186.4 111 82.0
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.8e-43 181.8 219 45.2
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.1e-42 179.1 111 79.3
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 4.1e-40 170.6 87 89.7
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 7.7e-39 166.4 167 54.5
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.4e-35 155.6 186 48.9
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 2.4e-32 144.8 131 54.2
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-32 144.1 322 53.1
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-24 119.0 99 63.6
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-24 119.0 96 64.6
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.1e-24 117.9 99 63.6
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.4e-24 117.1 108 59.3
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 7.7e-23 113.2 396 36.9
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 1.9e-21 108.6 536 30.4
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 9.5e-21 106.3 174 39.7
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 7.5e-18 96.7 155 40.0
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 5.4e-16 90.5 69 59.4
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 7.0e-16 90.1 209 27.8
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.8e-11 75.5 68 55.9
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 2.3e-11 75.1 170 32.9
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 4.0e-11 74.3 60 53.3
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 8.9e-11 73.2 119 42.9
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.2e-10 72.8 69 50.7
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-09 69.3 64 51.6
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 6.4e-09 67.0 54 51.9
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 7.8e-07 60.1 38 65.8
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.3e-06 59.3 55 52.7
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 2.3e-06 58.5 51 52.9
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 5.0e-06 57.4 92 35.9
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 5.0e-06 57.4 50 54.0


User provided reference genes

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