Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.5e-74 282.7 137 100.0
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 2.9e-70 268.5 137 92.7
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 4.9e-70 267.7 137 94.2
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 5.4e-69 264.2 136 95.6
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 9.9e-63 243.4 136 85.3
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 2.2e-62 242.3 137 83.9
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 3.8e-62 241.5 139 84.2
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 3.8e-62 241.5 139 84.2
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.9e-61 239.2 136 83.8
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 2.5e-61 238.8 136 83.1
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 9.3e-61 236.9 137 81.8
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.2e-60 236.5 136 81.6
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 2.1e-60 235.7 137 82.5
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 4.6e-60 234.6 137 82.5
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.8e-59 232.6 138 82.6
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 5.1e-59 231.1 138 80.4
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 5.1e-59 231.1 138 80.4
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 6.7e-59 230.7 137 83.2
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.1e-58 229.9 136 81.6
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.5e-58 229.6 136 80.9
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.9e-58 229.2 136 80.1
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.5e-58 228.8 136 78.7
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 3.3e-58 228.4 138 79.0
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.3e-58 228.4 138 80.4
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 9.6e-58 226.9 137 80.3
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.3e-57 226.5 137 79.6
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.3e-57 226.5 139 80.6
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 1.6e-57 226.1 136 81.6
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.1e-57 225.7 138 78.3
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 2.1e-57 225.7 137 79.6
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 2.8e-57 225.3 136 79.4
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 3.7e-57 224.9 138 79.0
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 3.7e-57 224.9 136 80.1
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 6.2e-57 224.2 136 80.9
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 2.4e-56 222.2 136 77.2
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 2.4e-56 222.2 138 78.3
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 3.1e-56 221.9 139 77.7
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.1e-56 221.9 133 81.2
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 4.0e-56 221.5 136 78.7
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 4.0e-56 221.5 136 79.4
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 5.3e-56 221.1 138 79.7
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 5.3e-56 221.1 138 79.7
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 9.0e-56 220.3 135 77.8
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 9.0e-56 220.3 136 78.7
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.2e-55 219.9 136 77.9
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 1.5e-55 219.5 132 81.1
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.5e-55 219.5 134 78.4
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.5e-55 219.5 138 79.0
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 3.4e-55 218.4 137 78.8
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 4.5e-55 218.0 136 77.2
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 4.5e-55 218.0 136 77.2
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 7.6e-55 217.2 137 76.6
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 1.0e-54 216.9 136 77.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.0e-54 216.9 133 78.9
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.3e-54 216.5 136 77.2
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.7e-54 216.1 137 77.4
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.7e-54 216.1 136 75.0
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 2.9e-54 215.3 147 74.8
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 2.9e-54 215.3 139 74.1
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 4.9e-54 214.5 137 76.6
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 4.9e-54 214.5 139 74.1
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 8.4e-54 213.8 137 75.2
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.1e-53 213.4 138 75.4
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 1.1e-53 213.4 137 75.2
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.4e-53 213.0 143 74.1
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.4e-53 213.0 133 77.4
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 1.4e-53 213.0 139 74.8
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.4e-53 213.0 138 73.2
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.9e-53 212.6 137 74.5
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.9e-53 212.6 138 73.2
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 1.9e-53 212.6 137 75.2
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 2.5e-53 212.2 138 76.1
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 2.5e-53 212.2 136 75.7
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 3.2e-53 211.8 138 77.5
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 4.2e-53 211.5 133 76.7
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 9.3e-53 210.3 138 73.9
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 9.3e-53 210.3 122 80.3
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.2e-52 209.9 136 73.5
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.6e-52 209.5 136 74.3
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 4.6e-52 208.0 146 72.6
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 4.6e-52 208.0 146 72.6
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 4.6e-52 208.0 146 72.6
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 4.6e-52 208.0 146 72.6
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 4.6e-52 208.0 138 75.4
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 4.6e-52 208.0 134 75.4
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 4.6e-52 208.0 136 74.3
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 7.9e-52 207.2 136 73.5
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 7.9e-52 207.2 132 72.0
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.3e-51 206.5 131 77.1
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 1.3e-51 206.5 139 72.7
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 2.3e-51 205.7 137 73.0
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 3.0e-51 205.3 137 74.5
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 5.7e-50 201.1 136 73.5
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.7e-50 201.1 137 72.3
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.7e-50 201.1 137 71.5
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 2.2e-49 199.1 138 69.6
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 4.8e-49 198.0 120 75.0
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 8.2e-49 197.2 118 76.3
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 1.1e-48 196.8 114 80.7
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-48 196.4 115 79.1
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.8e-48 196.1 115 79.1
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.1e-48 195.3 115 78.3
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 3.1e-48 195.3 114 79.8
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 3.1e-48 195.3 115 79.1
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.6e-47 192.2 114 77.2
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 2.6e-47 192.2 115 77.4
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 2.6e-47 192.2 115 77.4
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 2.6e-47 192.2 115 77.4
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 2.6e-47 192.2 140 67.1
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 2.6e-47 192.2 140 67.1
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 7.7e-47 190.7 115 76.5
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 7.7e-47 190.7 115 76.5
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 1.0e-46 190.3 109 79.8
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 3.8e-46 188.3 114 77.2
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 1.4e-45 186.4 143 66.4
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 5.5e-45 184.5 115 76.5
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 9.4e-45 183.7 119 76.5
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 2.2e-41 172.6 113 75.2
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.0e-38 163.7 136 63.2
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 2.9e-38 162.2 138 65.2
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 5.0e-38 161.4 97 73.2
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 1.9e-37 159.5 93 76.3
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 4.7e-36 154.8 126 57.9
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-35 153.3 84 82.1
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 5.3e-32 141.4 118 65.3
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 2.6e-31 139.0 110 62.7
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 2.2e-30 136.0 132 54.5
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.1e-28 129.4 67 83.6
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.1e-28 129.4 126 51.6
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 3.0e-27 125.6 126 54.8
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 5.2e-27 124.8 136 53.7
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 2.0e-26 122.9 72 83.3
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.2e-25 119.4 81 76.5
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 8.2e-25 117.5 59 84.7
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.3e-22 110.2 84 60.7
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 4.2e-21 105.1 59 76.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 5.5e-21 104.8 109 46.8
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 9.4e-21 104.0 122 44.3
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 1.2e-20 103.6 74 73.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 2.3e-19 99.4 103 53.4
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 2.0e-18 96.3 75 62.7
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 7.0e-16 87.8 79 59.5
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 5.9e-15 84.7 59 64.4
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.2e-14 82.8 105 42.9
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 7.2e-13 77.8 81 50.6
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 9.4e-13 77.4 80 52.5
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 2.6e-10 69.3 138 37.0
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 3.4e-10 68.9 86 50.0
Atru.chr4.3129 Acer truncatum HOM05D005190 ORTHO05D006183 2.3e-06 56.2 47 70.2
A08p09670 Brassica napus HOM05D005190 ORTHO05D006183 8.6e-06 54.3 35 71.4


User provided reference genes

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