Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 0.0e+00 1086.6 536 100.0
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.7e-288 995.3 540 91.3
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.3e-254 882.9 536 79.9
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 6.3e-254 880.6 533 80.3
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 1.2e-252 876.3 535 77.6
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 3.8e-251 871.3 563 76.2
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 4.2e-250 867.8 536 78.9
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 4.7e-249 864.4 536 78.0
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.8e-248 862.4 536 78.5
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 8.8e-248 860.1 536 78.4
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 4.8e-246 854.4 536 77.6
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 3.1e-245 851.7 529 77.7
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 4.1e-245 851.3 541 76.5
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.6e-244 849.4 541 75.8
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 2.6e-244 848.6 565 74.2
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 2.6e-244 848.6 536 76.1
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 1.7e-243 845.9 491 82.9
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 3.2e-242 841.6 550 75.1
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.1e-241 839.0 541 76.7
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 2.7e-241 838.6 534 75.7
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.0e-240 836.6 536 75.6
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.8e-240 835.9 545 73.9
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 2.3e-240 835.5 543 74.4
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 7.5e-239 830.5 533 74.7
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 1.3e-238 829.7 538 74.7
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 6.3e-238 827.4 537 74.7
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 4.1e-237 824.7 533 74.7
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 5.3e-237 824.3 536 73.9
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 9.1e-237 823.5 536 74.3
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 4.5e-236 821.2 537 73.2
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 5.9e-236 820.8 534 74.9
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 4.2e-234 814.7 577 69.5
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 2.7e-233 812.0 537 72.4
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 3.6e-233 811.6 539 72.4
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 1.2e-231 806.6 569 70.8
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 1.7e-230 802.7 537 72.3
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 6.5e-227 790.8 534 72.5
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 8.5e-227 790.4 550 71.6
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.7e-225 785.4 536 71.6
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 4.7e-225 784.6 538 71.2
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.4e-223 778.5 534 68.7
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 2.8e-222 775.4 532 72.9
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 1.8e-221 772.7 539 71.4
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.8e-221 772.7 548 69.0
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.2e-220 770.0 534 70.8
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.7e-220 768.8 539 71.6
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 5.9e-220 767.7 538 70.8
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 2.9e-219 765.4 534 69.1
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 5.0e-219 764.6 534 70.4
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.1e-218 763.5 536 70.7
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 3.3e-218 761.9 490 75.7
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.6e-217 759.6 531 68.9
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 6.1e-217 757.7 531 68.7
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 6.1e-217 757.7 542 68.8
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 2.6e-215 752.3 540 69.6
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 7.5e-215 750.7 538 67.7
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 7.5e-215 750.7 530 69.6
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 9.8e-215 750.4 559 67.4
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 6.4e-214 747.7 532 69.2
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 6.4e-214 747.7 535 69.2
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.0e-212 742.7 506 70.2
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 2.7e-212 742.3 551 67.9
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 7.8e-212 740.7 534 68.7
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.0e-211 740.3 534 68.7
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.3e-211 740.0 534 68.7
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.3e-211 739.2 533 68.7
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.1e-210 736.9 534 69.3
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 2.5e-210 735.7 537 64.8
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.2e-209 733.4 533 66.6
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.8e-208 729.6 536 68.1
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 6.8e-208 727.6 533 67.4
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.5e-207 726.5 537 65.9
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.5e-207 726.5 538 68.0
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 4.7e-201 704.9 483 71.8
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.1e-200 702.2 557 64.3
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.2e-196 690.3 608 59.9
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 8.1e-193 677.6 531 65.3
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 8.9e-192 674.1 515 67.0
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 6.0e-180 634.8 537 58.5
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 2.5e-178 629.4 537 60.1
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.6e-177 626.7 546 59.7
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 2.2e-174 616.3 531 54.6
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 9.3e-173 610.9 531 55.4
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 5.1e-171 605.1 599 53.6
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.5e-167 592.0 639 52.7
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 5.8e-167 591.7 528 54.0
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.1e-165 587.4 544 56.1
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.9e-162 576.6 537 55.1
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 1.9e-162 576.6 531 56.3
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.8e-160 570.1 560 55.5
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 2.1e-156 556.6 533 52.2
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.1e-152 544.3 301 83.4
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 4.5e-143 512.3 316 75.9
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 1.8e-136 490.3 528 46.0
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 5.5e-133 478.8 300 73.0
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 3.6e-132 476.1 301 75.1
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.1e-128 464.5 451 55.9
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 7.0e-128 461.8 565 48.7
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 6.3e-121 438.7 566 45.1
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 7.2e-117 425.2 244 82.0
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 8.8e-107 391.7 309 64.4
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.0e-94 351.7 629 33.9
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.2e-89 334.0 371 50.1
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 3.4e-82 310.1 495 36.6
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 2.1e-71 274.2 218 65.1
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 1.2e-66 258.5 576 31.8
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 1.4e-64 251.5 220 58.2
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 1.0e-62 245.4 217 61.8
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 3.6e-60 236.9 217 59.9
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.2e-57 227.6 216 57.9
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.9e-56 224.6 170 62.4
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.9e-56 224.6 216 56.9
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 9.3e-56 222.2 216 56.5
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.0e-50 204.5 104 87.5
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 4.3e-37 160.2 85 82.4
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 3.7e-36 157.1 188 47.9
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 3.2e-32 144.1 136 57.4
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.1e-27 127.5 307 31.3
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.8e-17 94.0 402 23.4
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 8.5e-17 92.8 48 89.6
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.0e-14 84.3 115 47.8
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 2.2e-12 78.2 48 79.2
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.5e-08 65.5 31 83.9
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.5e-08 65.5 31 83.9
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.5e-08 65.5 31 83.9
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.5e-08 65.5 31 83.9
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.9e-08 65.1 109 38.5
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 4.2e-08 63.9 31 80.6
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 1.2e-07 62.4 57 59.6
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 2.7e-07 61.2 51 56.9
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 3.6e-07 60.8 53 62.3


User provided reference genes

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