Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.4e-34 147.5 100 100.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 3.9e-32 141.4 76 96.1
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.1e-31 139.8 76 93.4
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 7.3e-31 137.1 76 94.7
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 6.9e-29 130.6 73 89.0
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.2e-28 129.8 73 91.8
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.2e-28 129.8 73 91.8
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.2e-28 129.8 73 91.8
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.2e-28 129.8 73 90.4
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.5e-28 129.4 73 90.4
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.5e-28 129.4 73 90.4
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 4.4e-28 127.9 73 89.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.4e-28 127.9 73 90.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 5.8e-28 127.5 73 89.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 7.6e-28 127.1 73 89.0
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 9.9e-28 126.7 72 88.9
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 9.9e-28 126.7 73 90.4
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.3e-27 126.3 73 89.0
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.7e-27 125.9 73 89.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 2.2e-27 125.6 73 87.7
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 2.2e-27 125.6 73 87.7
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.2e-27 125.6 73 87.7
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.2e-27 125.6 73 89.0
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 2.2e-27 125.6 73 87.7
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.2e-27 125.6 73 89.0
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.9e-27 125.2 73 86.3
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.9e-27 125.2 73 87.7
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.9e-27 125.2 70 91.4
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.9e-27 125.2 73 87.7
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.9e-27 125.2 73 87.7
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.9e-27 125.2 73 87.7
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 4.9e-27 124.4 73 89.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 73 89.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 73 89.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 73 89.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 4.9e-27 124.4 73 84.9
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 6.4e-27 124.0 73 87.7
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.4e-27 124.0 73 87.7
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 6.4e-27 124.0 69 94.2
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 6.4e-27 124.0 69 94.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 6.4e-27 124.0 69 94.2
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.4e-27 124.0 76 84.2
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 6.4e-27 124.0 73 87.7
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 8.4e-27 123.6 73 83.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.4e-27 123.6 73 84.9
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-26 123.2 73 86.3
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.4e-26 122.9 73 86.3
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 2.4e-26 122.1 69 92.8
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.4e-26 122.1 76 84.2
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 3.2e-26 121.7 69 92.8
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.2e-26 121.7 71 88.7
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 4.2e-26 121.3 73 84.9
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.2e-26 121.3 73 86.3
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 4.2e-26 121.3 73 86.3
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 4.2e-26 121.3 73 83.6
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 7.1e-26 120.6 73 82.2
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.2e-25 119.8 70 88.6
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.2e-25 119.8 73 83.6
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.6e-25 119.4 73 83.6
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.6e-25 119.4 72 86.1
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.6e-25 119.4 97 68.0
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.6e-25 119.4 73 80.8
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.6e-25 119.4 73 83.6
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.1e-25 119.0 73 83.6
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.1e-25 119.0 75 82.7
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.7e-25 118.6 73 83.6
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 2.7e-25 118.6 73 83.6
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.7e-25 118.6 71 81.7
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.5e-25 118.2 73 80.8
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 4.6e-25 117.9 73 76.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 4.6e-25 117.9 73 83.6
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 6.0e-25 117.5 71 83.1
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.8e-25 117.1 70 85.7
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 7.8e-25 117.1 73 83.6
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.0e-24 116.7 70 82.9
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.3e-24 116.3 71 83.1
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.3e-24 116.3 73 79.5
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.7e-24 115.9 70 82.9
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.3e-24 115.5 73 80.8
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.0e-24 115.2 73 76.7
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.0e-24 115.2 72 81.9
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 3.0e-24 115.2 70 84.3
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 3.0e-24 115.2 72 81.9
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.9e-24 114.8 69 85.5
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 3.9e-24 114.8 71 80.3
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.1e-24 114.4 72 81.9
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 6.6e-24 114.0 71 81.7
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 6.6e-24 114.0 73 83.6
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 6.6e-24 114.0 73 78.1
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 8.7e-24 113.6 73 83.6
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 8.7e-24 113.6 73 76.7
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 8.7e-24 113.6 73 79.5
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 8.7e-24 113.6 71 80.3
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 8.7e-24 113.6 71 83.1
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.1e-23 113.2 71 78.9
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.1e-23 113.2 71 80.3
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.5e-23 112.8 69 84.1
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.5e-23 112.8 71 80.3
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.5e-23 112.8 71 78.9
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 1.9e-23 112.5 71 78.9
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.9e-23 112.5 69 84.1
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.9e-23 112.5 74 82.4
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.5e-23 112.1 71 77.5
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.5e-23 112.1 69 85.5
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.5e-23 112.1 72 80.6
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.3e-23 111.7 71 78.9
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 3.3e-23 111.7 73 78.1
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 4.3e-23 111.3 71 78.9
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 5.6e-23 110.9 71 78.9
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 5.6e-23 110.9 71 78.9
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.6e-23 110.2 70 80.0
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 9.6e-23 110.2 71 78.9
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-22 109.8 71 76.1
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-22 109.8 71 76.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-22 109.8 71 76.1
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.6e-22 109.4 71 77.5
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.6e-22 109.4 71 77.5
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.6e-22 109.4 71 77.5
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.8e-22 108.6 71 74.6
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-22 108.6 71 74.6
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-22 108.6 71 74.6
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-22 108.6 71 74.6
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.6e-22 108.2 73 76.7
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.1e-21 106.7 69 78.3
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 4.0e-21 104.8 69 76.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 9.0e-21 103.6 69 75.4
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 9.0e-21 103.6 69 75.4
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 9.0e-21 103.6 69 75.4
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.2e-20 103.2 73 75.3
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.4e-18 96.3 68 76.5
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.4e-18 96.3 74 64.9
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 6.0e-17 90.9 70 68.6
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.0e-16 90.1 70 65.7
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 5.1e-16 87.8 70 62.9
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.6e-14 82.8 70 64.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.6e-14 82.8 70 64.3
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.1e-14 82.4 52 78.8
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.1e-14 82.4 52 78.8
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.4e-13 79.7 44 88.6
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.6e-12 75.5 71 62.0
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 3.4e-12 75.1 51 70.6
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.2e-10 68.6 46 76.1
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 3.2e-10 68.6 36 94.4
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 2.7e-09 65.5 70 48.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.5e-09 65.1 38 84.2


User provided reference genes

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