Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.2e-209 731.1 363 100.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.7e-194 682.6 363 93.7
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 5.3e-188 661.0 386 86.8
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 5.9e-187 657.5 400 84.5
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 9.1e-156 553.9 341 81.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.7e-152 542.3 336 80.4
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.0e-151 540.4 365 74.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.0e-150 536.2 347 78.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 7.5e-150 534.3 324 80.2
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.3e-149 533.5 330 79.7
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.1e-148 530.4 350 76.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 4.1e-148 528.5 340 77.6
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 9.1e-148 527.3 346 77.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.2e-147 526.9 356 76.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.6e-147 526.6 358 73.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.7e-147 525.8 335 77.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.3e-146 522.7 332 78.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 3.8e-146 521.9 331 77.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 5.0e-146 521.5 338 77.8
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 8.6e-146 520.8 331 78.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-145 520.4 332 77.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.5e-145 520.0 333 78.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.5e-145 520.0 326 77.6
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.9e-145 519.6 323 79.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.2e-145 518.5 327 77.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.2e-145 518.5 323 77.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.2e-145 518.5 329 76.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 5.5e-145 518.1 353 72.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 9.5e-145 517.3 331 77.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.6e-144 516.5 327 76.5
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.1e-144 516.2 340 74.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 3.6e-144 515.4 328 78.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.7e-144 515.0 363 70.8
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 6.1e-144 514.6 358 73.5
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 8.0e-144 514.2 327 76.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.0e-143 513.8 328 78.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.4e-143 513.5 334 73.7
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.8e-143 513.1 346 74.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.0e-143 512.3 327 75.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.0e-143 511.9 353 72.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.2e-143 511.5 327 75.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 6.8e-143 511.1 330 76.1
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-142 510.4 337 73.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.5e-142 510.0 353 72.2
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.5e-142 510.0 353 72.2
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-142 510.0 342 73.7
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.5e-142 510.0 330 77.6
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.0e-142 509.6 337 74.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.6e-142 509.2 327 75.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 5.7e-142 508.1 326 76.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 9.8e-142 507.3 314 80.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 9.8e-142 507.3 346 73.7
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-141 506.9 328 75.9
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.3e-141 506.9 349 73.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.2e-141 506.1 328 76.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.8e-141 505.8 330 75.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 4.9e-141 505.0 347 74.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.9e-141 505.0 352 71.3
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 4.9e-141 505.0 341 74.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 4.9e-141 505.0 350 73.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 6.3e-141 504.6 337 74.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 8.3e-141 504.2 364 70.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.1e-140 503.8 330 74.5
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.4e-140 503.4 346 73.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.4e-140 503.4 328 76.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-140 503.4 323 77.4
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.4e-140 503.4 332 74.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.4e-140 502.7 347 73.5
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.4e-140 502.7 332 74.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 5.4e-140 501.5 347 73.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 5.4e-140 501.5 338 74.3
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 9.2e-140 500.7 315 80.0
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.2e-139 500.4 344 74.1
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.6e-139 500.0 347 72.9
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.5e-139 498.8 346 72.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 7.8e-139 497.7 347 73.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 7.8e-139 497.7 352 71.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 7.8e-139 497.7 334 73.1
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 7.8e-139 497.7 349 71.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.0e-138 497.3 338 75.4
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.7e-138 496.5 336 72.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.7e-138 496.5 345 72.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.0e-138 495.0 336 72.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 5.0e-138 495.0 322 75.8
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.6e-138 494.6 335 74.3
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.9e-137 493.0 365 69.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.5e-137 492.7 328 73.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 3.3e-137 492.3 327 73.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 4.3e-137 491.9 330 73.3
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 5.6e-137 491.5 312 78.5
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 7.3e-137 491.1 347 71.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 9.5e-137 490.7 323 75.5
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.6e-136 490.0 329 72.6
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.6e-136 490.0 338 73.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.1e-136 489.6 308 78.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.7e-136 488.4 355 69.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.8e-135 486.5 304 79.3
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.3e-135 486.1 342 72.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.0e-135 485.7 366 66.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 5.2e-135 485.0 338 72.8
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.2e-134 483.8 383 65.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.0e-134 483.0 346 69.9
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 3.4e-134 482.3 338 71.9
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.8e-134 481.5 328 73.5
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 9.8e-134 480.7 340 73.2
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.4e-132 476.9 546 50.2
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.2e-131 473.8 357 68.1
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.6e-131 473.4 327 73.1
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.7e-131 472.6 319 75.5
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-129 466.8 313 76.4
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.5e-129 466.1 337 68.5
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.5e-129 466.1 331 69.2
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.3e-129 465.7 351 70.1
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.3e-129 464.5 324 72.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.6e-128 463.4 397 62.5
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.6e-128 463.4 344 66.6
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 8.0e-128 461.1 351 66.7
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.1e-127 459.1 313 74.4
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.8e-126 454.9 332 68.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.7e-125 453.4 338 69.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.2e-125 453.0 322 69.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.7e-125 452.2 322 70.2
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-123 447.2 270 80.0
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.0e-123 444.9 323 70.3
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 5.2e-119 431.8 332 66.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.1e-116 422.2 326 64.7
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.5e-113 413.7 349 65.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-111 407.5 265 77.0
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.8e-111 406.8 250 80.0
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.1e-108 397.5 280 75.0
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.4e-108 396.4 328 63.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.0e-102 376.7 247 73.7
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.6e-99 367.1 287 67.2
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.5e-97 359.8 321 57.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 6.2e-96 355.1 332 54.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.4e-95 353.2 232 75.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.4e-92 342.0 201 83.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.7e-91 339.7 267 66.3
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 8.7e-90 334.7 214 79.0
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 4.5e-86 322.4 210 78.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.9e-85 318.9 287 57.1
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.5e-83 312.8 214 73.8
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 5.9e-70 268.9 163 81.0
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.6e-67 260.8 218 63.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.9e-66 256.1 161 78.3
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.1e-66 255.8 380 40.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.3e-65 253.1 168 73.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.1e-63 248.1 170 73.5
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.7e-59 233.4 166 68.1
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 8.2e-56 221.9 161 69.6
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.5e-49 201.1 252 46.4
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 5.9e-46 189.1 122 74.6
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.5e-44 183.7 193 52.3
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.2e-43 181.4 339 37.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.7e-35 153.7 117 66.7
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.2e-28 129.8 142 50.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.0e-27 125.6 288 33.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 4.0e-26 123.2 386 30.8
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 6.8e-26 122.5 268 32.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.4e-25 120.2 71 81.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.9e-22 109.4 128 49.2
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.5e-20 104.0 69 68.1
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 6.1e-19 99.4 63 68.3
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.2e-17 95.1 91 54.9
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.6e-17 94.0 57 77.2
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.4e-15 86.3 56 78.6
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.0e-09 67.8 62 58.1
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 2.1e-06 57.8 79 41.8


User provided reference genes

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