Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.2e-69 264.6 138 100.0
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.7e-59 230.7 142 85.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.0e-54 216.9 142 84.5
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.6e-52 209.5 137 79.6
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 2.7e-52 208.8 138 81.9
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 4.7e-52 208.0 138 82.6
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.8e-51 206.1 143 79.0
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 5.2e-51 204.5 138 81.2
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.1e-50 203.4 138 80.4
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.0e-50 202.6 139 80.6
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.0e-50 202.6 139 80.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 3.3e-50 201.8 139 80.6
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 5.7e-50 201.1 141 75.9
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 7.4e-50 200.7 141 78.7
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 81.3
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 79.1
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 79.1
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.2e-49 199.1 138 76.1
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.2e-49 199.1 139 77.7
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.2e-49 199.1 139 77.7
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 6.3e-49 197.6 136 79.4
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.3e-49 197.6 139 77.7
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 6.3e-49 197.6 139 79.1
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.1e-48 196.8 138 78.3
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 77.0
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.4e-48 195.7 140 75.7
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.1e-48 195.3 143 74.8
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 3.1e-48 195.3 139 77.0
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 4.1e-48 194.9 138 71.7
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 4.1e-48 194.9 135 75.6
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 137 76.6
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 5.3e-48 194.5 140 73.6
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.3e-48 194.5 138 74.6
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 7.0e-48 194.1 139 77.7
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 9.1e-48 193.7 135 76.3
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.2e-47 193.4 137 74.5
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.0e-47 192.6 139 74.8
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.6e-47 192.2 140 75.7
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 3.5e-47 191.8 138 77.5
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 4.5e-47 191.4 138 76.8
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 4.5e-47 191.4 139 72.7
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 1.0e-46 190.3 138 76.8
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.0e-46 190.3 135 77.8
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.3e-46 189.9 138 77.5
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.3e-46 189.9 139 74.8
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.3e-46 189.9 139 75.5
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.7e-46 189.5 137 75.9
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 2.2e-46 189.1 138 76.8
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.2e-46 189.1 139 73.4
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.2e-46 189.1 139 75.5
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 2.9e-46 188.7 138 76.1
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.9e-46 188.7 138 74.6
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.9e-46 188.7 138 74.6
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 5.0e-46 188.0 138 72.5
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 8.5e-46 187.2 139 75.5
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 8.5e-46 187.2 140 72.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-45 186.8 138 72.5
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-45 186.8 138 72.5
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-45 186.8 138 72.5
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.1e-45 186.8 138 72.5
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.1e-45 186.8 138 72.5
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.1e-45 186.8 143 72.7
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.5e-45 186.4 139 73.4
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.5e-45 186.4 139 73.4
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 72.1
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 72.1
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.9e-45 186.0 138 76.8
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.5e-45 185.7 140 72.1
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.5e-45 185.7 158 69.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.2e-45 185.3 139 72.7
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.2e-45 185.3 139 72.7
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.2e-45 185.3 139 72.7
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 4.2e-45 184.9 142 73.2
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 5.5e-45 184.5 139 71.9
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 5.5e-45 184.5 140 71.4
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 5.5e-45 184.5 140 71.4
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 5.5e-45 184.5 140 70.7
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 7.2e-45 184.1 140 71.4
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 7.2e-45 184.1 139 71.9
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 7.2e-45 184.1 139 71.9
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 7.2e-45 184.1 135 70.4
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 7.2e-45 184.1 140 72.1
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 7.2e-45 184.1 138 74.6
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 9.4e-45 183.7 140 71.4
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 9.4e-45 183.7 140 71.4
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 9.4e-45 183.7 143 72.0
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 9.4e-45 183.7 139 74.1
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.2e-44 183.3 140 70.0
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.2e-44 183.3 139 71.2
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.6e-44 183.0 134 72.4
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.6e-44 183.0 134 72.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.1e-44 182.6 138 72.5
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.7e-44 182.2 141 72.3
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.7e-44 182.2 157 66.9
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.7e-44 182.2 141 69.5
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 3.6e-44 181.8 138 68.1
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.6e-44 181.8 139 74.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.6e-44 181.8 144 72.2
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 4.7e-44 181.4 141 73.8
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.7e-44 181.4 142 70.4
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 4.7e-44 181.4 139 73.4
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 4.7e-44 181.4 139 73.4
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 4.7e-44 181.4 134 73.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.1e-44 181.0 139 71.2
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 6.1e-44 181.0 139 72.7
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.0e-43 180.3 139 71.9
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.0e-43 180.3 139 71.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.8e-43 179.5 139 70.5
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.3e-43 179.1 139 71.2
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.3e-43 179.1 142 71.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.3e-43 179.1 140 70.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 3.0e-43 178.7 140 70.7
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 4.0e-43 178.3 143 72.7
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 4.0e-43 178.3 131 72.5
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 4.0e-43 178.3 136 69.1
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 4.0e-43 178.3 139 71.9
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 6.8e-43 177.6 139 69.1
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 8.8e-43 177.2 139 70.5
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 8.8e-43 177.2 137 73.7
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.2e-42 176.8 143 71.3
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.5e-42 176.4 137 67.2
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.0e-42 176.0 134 73.9
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 131 71.0
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 4.4e-42 174.9 137 67.9
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.7e-42 174.5 138 67.4
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 7.5e-42 174.1 139 67.6
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 9.8e-42 173.7 141 66.0
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.3e-41 173.3 139 68.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.2e-41 172.6 131 71.0
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 2.2e-41 172.6 138 72.5
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 4.8e-41 171.4 133 69.2
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 6.3e-41 171.0 135 69.6
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.4e-40 169.1 130 69.2
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 3.5e-39 165.2 137 66.4
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 3.5e-39 165.2 137 66.4
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 7.7e-39 164.1 88 92.0
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 3.8e-38 161.8 136 66.2
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 9.4e-37 157.1 89 86.5
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.0e-35 153.7 139 61.9
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.0e-35 151.8 140 57.1
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.0e-34 149.4 119 66.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.3e-33 146.7 152 58.6
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.8e-32 142.9 105 71.4
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.4e-32 142.5 137 59.1
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.2e-31 140.2 135 56.3
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.3e-30 136.7 112 68.8
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.9e-29 132.9 127 57.5
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.2e-28 130.2 113 59.3
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.2e-28 130.2 139 59.0
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.6e-26 122.5 139 58.3
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.3e-25 120.2 145 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.7e-25 119.8 113 55.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 2.2e-25 119.4 92 70.7
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.1e-24 115.2 145 49.0
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 9.2e-24 114.0 145 48.3
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 3.5e-23 112.1 88 73.9
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.5e-23 112.1 136 49.3
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.1e-21 107.1 87 67.8
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 9.5e-21 104.0 66 71.2
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.2e-20 103.6 53 90.6
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.2e-20 103.6 88 55.7
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.4e-16 89.4 80 57.5
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 9.2e-16 87.4 138 43.5
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.2e-12 77.0 78 60.3
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 5.8e-10 68.2 74 56.8
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.7e-06 56.6 32 93.8


User provided reference genes

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