Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.7e-70 269.2 138 100.0
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.3e-67 258.8 138 94.9
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.0e-63 245.7 140 90.7
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 8.8e-59 230.3 140 84.3
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 7.4e-58 227.3 140 83.6
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.3e-57 226.5 140 82.9
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 6.3e-57 224.2 141 83.0
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.4e-56 223.0 140 81.4
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.8e-56 222.6 140 80.7
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.4e-56 222.2 140 81.4
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.4e-56 222.2 140 81.4
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.4e-56 222.2 140 80.7
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 9.1e-56 220.3 138 81.2
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 3.5e-55 218.4 141 80.1
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 3.5e-55 218.4 139 78.4
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 5.9e-55 217.6 138 79.0
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 5.9e-55 217.6 140 80.0
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 7.7e-55 217.2 138 79.0
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 7.7e-55 217.2 139 79.1
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.3e-54 216.5 138 79.7
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.7e-54 216.1 138 81.2
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.7e-54 216.1 139 79.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 2.2e-54 215.7 140 80.0
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.2e-54 215.7 140 79.3
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 3.8e-54 214.9 140 78.6
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 6.5e-54 214.2 140 78.6
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 8.5e-54 213.8 138 79.7
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.1e-53 213.4 139 77.0
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 76.4
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 78.6
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 5.5e-53 211.1 140 76.4
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 7.2e-53 210.7 140 76.4
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 7.2e-53 210.7 141 78.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.2e-53 210.7 141 80.9
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 7.2e-53 210.7 141 78.7
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.2e-53 210.7 138 77.5
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.2e-53 210.7 140 74.3
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 9.4e-53 210.3 141 80.1
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 9.4e-53 210.3 140 77.9
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.2e-52 209.9 140 77.9
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 77.9
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 77.9
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 2.1e-52 209.1 133 81.2
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.6e-52 208.4 138 75.4
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 79.3
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.1e-52 207.6 139 78.4
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 6.1e-52 207.6 139 74.8
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 8.0e-52 207.2 140 78.6
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.0e-51 206.8 141 75.9
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.4e-51 206.5 139 78.4
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.4e-51 206.5 140 75.7
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.3e-51 205.7 135 77.0
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 78.7
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 78.7
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 77.1
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 3.0e-51 205.3 142 76.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.0
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.0
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.0
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.0
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.0
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.9e-51 204.9 140 75.7
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 3.9e-51 204.9 140 77.1
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 74.8
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 6.7e-51 204.1 141 74.5
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 8.8e-51 203.8 135 79.3
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.1e-50 203.4 139 78.4
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.1e-50 203.4 140 75.7
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.5e-50 203.0 136 75.0
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 76.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 78.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 78.0
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 78.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 78.0
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 78.0
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.0e-50 202.6 140 72.9
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.6e-50 202.2 139 77.0
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.6e-50 202.2 140 75.7
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 3.3e-50 201.8 140 75.0
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 4.4e-50 201.4 140 77.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 4.4e-50 201.4 140 75.0
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 4.4e-50 201.4 141 76.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 4.4e-50 201.4 140 75.0
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 76.6
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 71.4
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 2.8e-49 198.7 141 75.9
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.8e-49 198.7 141 75.9
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 2.8e-49 198.7 141 74.5
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 3.7e-49 198.4 142 74.6
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 3.7e-49 198.4 142 75.4
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 3.7e-49 198.4 142 75.4
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 75.9
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 75.2
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 8.2e-49 197.2 142 74.6
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 8.2e-49 197.2 142 75.4
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 8.2e-49 197.2 142 75.4
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 8.2e-49 197.2 140 75.7
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 74.6
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 74.6
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 75.4
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 73.2
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.4e-48 196.4 140 74.3
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 73.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.8e-48 196.1 142 76.8
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.4e-48 195.7 140 73.6
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.4e-48 195.7 142 73.2
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 4.1e-48 194.9 139 74.8
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 7.0e-48 194.1 140 73.6
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 9.1e-48 193.7 139 71.9
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 9.1e-48 193.7 142 69.0
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.2e-47 193.4 155 69.0
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.0e-47 192.6 140 70.7
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.0e-47 192.6 140 70.7
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.5e-47 191.8 138 74.6
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 4.5e-47 191.4 134 75.4
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 7.7e-47 190.7 141 73.8
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.0e-46 190.3 141 74.5
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.7e-46 189.5 141 73.0
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.2e-46 189.1 145 72.4
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.9e-46 188.7 133 75.2
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 3.8e-46 188.3 139 71.9
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 5.0e-46 188.0 142 71.1
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 6.5e-46 187.6 138 71.7
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 8.5e-46 187.2 143 72.0
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 8.5e-46 187.2 143 72.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.1e-45 186.8 134 72.4
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.2e-45 184.1 144 68.8
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 9.4e-45 183.7 141 72.3
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.7e-44 182.2 109 80.7
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 2.3e-43 179.1 140 68.6
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.3e-43 179.1 140 67.1
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 134 66.4
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.4e-42 174.9 140 66.4
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 4.4e-42 174.9 134 67.2
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 9.8e-42 173.7 139 64.7
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.8e-40 169.5 160 63.1
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.6e-39 166.4 121 71.1
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.0e-39 166.0 137 63.5
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.0e-39 166.0 139 66.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 8.5e-38 160.6 138 65.2
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.1e-36 156.0 154 62.3
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 6.1e-36 154.5 140 61.4
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.0e-35 152.1 147 58.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 2.6e-34 149.1 117 63.2
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 9.8e-34 147.1 89 82.0
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.3e-33 146.7 88 81.8
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.1e-32 142.1 114 67.5
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 5.4e-32 141.4 136 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.9e-30 135.6 140 56.4
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.9e-30 135.6 120 60.8
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 5.5e-29 131.3 90 75.6
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.7e-28 128.3 140 52.1
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.7e-28 128.3 134 55.2
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.4e-27 126.7 136 52.9
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-27 126.3 147 50.3
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.2e-26 123.6 89 74.2
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.9e-25 119.0 136 54.4
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.6e-23 113.2 89 65.2
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 2.3e-22 109.4 79 74.7
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 4.7e-20 101.7 88 54.5
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.0e-19 100.5 67 68.7
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.4e-19 100.1 53 84.9
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.8e-19 99.8 85 64.7
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 4.4e-18 95.1 139 45.3
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 7.0e-16 87.8 80 56.2
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.7e-09 66.6 133 41.4


User provided reference genes

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