Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 0.0e+00 1076.6 609 100.0
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 8.9e-172 607.8 611 65.8
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 8.4e-154 548.1 541 59.1
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.1e-129 468.0 609 45.0
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.4e-124 451.1 610 51.8
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.3e-122 444.5 614 51.6
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 8.5e-122 441.8 616 51.0
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 3.2e-121 439.9 607 50.2
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 3.0e-119 433.3 433 64.0
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 1.1e-118 431.4 602 49.5
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.1e-116 424.9 599 42.7
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 2.4e-116 423.7 506 49.4
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 9.1e-116 421.8 543 51.9
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.5e-115 421.0 650 41.4
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 2.9e-114 416.8 608 42.3
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 8.5e-114 415.2 608 41.8
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.4e-111 407.9 604 42.2
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 1.8e-111 407.5 624 40.7
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 9.7e-110 401.7 583 45.6
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.7e-109 401.0 601 39.9
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 2.8e-109 400.2 489 45.2
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 6.3e-109 399.1 480 47.5
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.6e-107 394.4 593 40.6
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.7e-107 392.1 491 45.0
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 1.0e-106 391.7 601 42.1
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 2.9e-106 390.2 490 44.7
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 5.0e-106 389.4 539 40.4
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 1.1e-105 388.3 505 45.1
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-105 387.9 535 42.2
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 4.2e-105 386.3 497 43.5
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 7.2e-105 385.6 592 40.7
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 9.4e-105 385.2 491 53.0
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 9.4e-105 385.2 583 46.7
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 3.6e-104 383.3 471 46.5
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.1e-104 382.5 475 44.2
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 8.0e-104 382.1 478 44.4
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 2.3e-103 380.6 600 38.2
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.3e-103 380.6 478 44.1
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 2.3e-103 380.6 491 44.8
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.0e-103 379.8 478 44.1
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 6.7e-103 379.0 496 42.1
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-102 377.9 475 43.6
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 2.6e-102 377.1 561 46.5
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 2.8e-101 373.6 498 40.4
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 4.8e-101 372.9 496 40.7
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 2.4e-100 370.5 490 46.5
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 3.1e-100 370.2 569 39.5
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 9.1e-100 368.6 496 40.1
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 5.0e-98 362.8 606 46.5
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 6.5e-98 362.5 404 49.0
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 5.5e-97 359.4 444 43.5
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 6.1e-96 355.9 525 40.8
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.0e-95 355.1 605 37.4
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.0e-95 355.1 498 39.0
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 1.4e-95 354.8 518 42.9
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 2.3e-95 354.0 560 44.8
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 3.0e-95 353.6 394 48.5
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 5.2e-95 352.8 533 40.0
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 2.8e-93 347.1 520 38.8
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 6.3e-93 345.9 474 40.9
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 8.3e-93 345.5 520 38.7
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.8e-92 344.4 520 38.8
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 1.6e-91 341.3 486 40.1
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-91 341.3 501 39.7
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 2.7e-91 340.5 583 44.6
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 7.7e-91 339.0 600 36.0
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.3e-90 337.4 520 37.9
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 8.6e-90 335.5 489 47.9
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 8.6e-90 335.5 550 38.2
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-87 328.2 408 44.6
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.4e-87 328.2 336 49.7
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.4e-87 328.2 490 47.1
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 2.3e-87 327.4 437 41.2
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 6.8e-87 325.9 418 46.7
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 8.8e-87 325.5 489 43.6
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.2e-86 325.1 381 44.9
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 4.4e-86 323.2 523 41.9
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 7.5e-86 322.4 414 44.9
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 9.8e-86 322.0 446 41.7
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 1.1e-84 318.5 492 38.2
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 7.0e-84 315.8 560 34.5
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 2.0e-83 314.3 490 39.0
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 5.9e-83 312.8 443 41.1
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.7e-82 311.2 457 38.9
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 3.3e-81 307.0 491 36.9
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 4.3e-81 306.6 491 38.9
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 9.5e-81 305.4 543 43.8
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.8e-80 303.9 528 43.2
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 3.6e-80 303.5 493 45.0
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 6.1e-80 302.8 486 36.0
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 6.1e-80 302.8 533 34.0
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 8.0e-80 302.4 329 47.7
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 1.4e-79 301.6 543 34.3
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.4e-79 301.6 543 34.3
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.3e-79 300.8 506 45.5
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 5.2e-79 299.7 533 35.6
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 8.9e-79 298.9 521 44.3
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-78 298.5 543 34.1
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 3.4e-78 297.0 329 45.0
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 5.7e-78 296.2 544 34.2
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 7.5e-78 295.8 495 34.7
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 9.8e-78 295.4 462 37.4
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 2.9e-77 293.9 462 37.2
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 2.9e-77 293.9 462 38.7
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 4.9e-77 293.1 453 38.2
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 6.4e-77 292.7 462 37.4
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 6.4e-77 292.7 462 37.4
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.4e-76 291.6 474 37.1
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 3.2e-76 290.4 462 36.6
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 4.1e-76 290.0 335 45.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 4.1e-76 290.0 495 35.4
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 4.1e-76 290.0 610 33.4
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 5.4e-76 289.7 532 42.3
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 5.0e-74 283.1 316 47.5
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 8.6e-74 282.3 387 39.0
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 1.1e-73 282.0 467 36.2
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 1.1e-73 282.0 461 37.5
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 1.9e-73 281.2 317 47.0
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 1.9e-73 281.2 334 46.4
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 1.9e-73 281.2 334 46.7
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-72 277.7 334 46.1
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 8.0e-72 275.8 329 43.5
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.4e-71 275.0 524 32.6
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.8e-71 272.7 363 46.0
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 1.1e-68 265.4 413 38.7
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 4.1e-68 263.5 341 40.5
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 3.5e-67 260.4 279 48.7
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 7.8e-67 259.2 393 37.9
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.0e-66 258.8 254 52.4
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 2.3e-63 247.7 387 41.6
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 5.2e-63 246.5 499 34.1
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 5.2e-63 246.5 221 55.7
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 7.1e-60 236.1 331 41.7
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 1.2e-59 235.3 331 42.0
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 3.6e-56 223.8 374 36.6
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 1.7e-53 214.9 370 37.6
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-53 214.2 374 37.7
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.1e-52 210.3 312 41.7
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.7e-50 204.9 372 36.8
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-48 198.0 318 38.7
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 4.7e-48 196.8 258 43.4
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 9.9e-46 189.1 310 37.4
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 1.7e-45 188.3 192 46.4
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 3.8e-45 187.2 197 48.7
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 8.4e-45 186.0 290 42.1
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 7.1e-44 183.0 249 39.8
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.6e-42 176.4 233 42.9
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 1.3e-40 172.2 288 36.8
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 1.3e-40 172.2 262 39.7
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 9.0e-39 166.0 283 36.0
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.0e-38 164.9 312 34.3
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 2.6e-38 164.5 155 57.4
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 3.4e-38 164.1 301 39.5
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 9.9e-38 162.5 235 43.8
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 8.4e-37 159.5 209 60.8
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 8.7e-34 149.4 220 39.5
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 9.0e-31 139.4 143 46.9
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.5e-30 138.7 155 46.5
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.8e-30 136.7 213 40.4
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 5.6e-25 120.2 233 35.6
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 2.2e-21 108.2 220 28.2
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 2.5e-20 104.8 198 56.6
Nitab4.5_0000743g0080 Nicotiana tabacum HOM05D003177 ORTHO05D003481 5.1e-18 97.1 204 32.8
Lju3590A0T11 Lonicera japonica HOM05D003177 ORTHO05D003481 1.3e-16 92.4 129 39.5
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.2e-14 85.9 150 33.3
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 4.5e-14 84.0 166 44.0
FvH4_3g41772 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-12 79.3 102 38.2
Lj1A863T65 Lonicera japonica HOM05D003177 ORTHO05D003481 3.2e-12 77.8 76 47.4
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 3.2e-12 77.8 176 32.4
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 4.6e-11 73.9 116 39.7
Sc19g0005950 Simmondsia chinensis HOM05D003177 ORTHO05D003481 8.8e-10 69.7 70 52.9
CARHR228590 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.1e-09 69.3 88 36.4
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 7.4e-09 66.6 109 36.7
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 4.8e-08 63.9 219 24.7
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.4e-07 62.4 113 69.0
Glyma.12G135400 Glycine max HOM05D003177 ORTHO05D003481 5.9e-06 57.0 101 31.7


User provided reference genes

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