Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.2e-136 491.1 585 100.0
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 1.2e-101 374.8 685 73.9
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 3.1e-97 360.1 585 78.1
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 7.7e-96 355.5 583 72.9
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 7.2e-94 349.0 585 74.0
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 9.4e-94 348.6 585 78.3
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.7e-93 347.1 585 76.6
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.3e-92 344.0 583 69.3
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 3.0e-92 343.6 583 75.0
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 8.8e-92 342.0 585 82.9
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 5.7e-91 339.3 585 74.5
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 6.3e-90 335.9 583 78.2
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 4.1e-89 333.2 584 83.0
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 5.3e-89 332.8 586 67.7
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 5.3e-89 332.8 583 73.8
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 7.0e-89 332.4 584 81.3
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 1.2e-88 331.6 598 75.3
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.6e-88 330.5 584 82.9
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.0e-87 328.6 583 81.3
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.3e-87 328.2 598 75.9
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.2e-87 327.4 585 70.3
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 5.5e-86 322.8 581 72.3
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.2e-85 321.6 583 73.9
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 2.7e-85 320.5 585 79.1
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 8.8e-84 315.5 587 67.8
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.1e-83 315.1 591 71.6
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.5e-83 314.7 591 73.9
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 3.3e-83 313.5 586 80.9
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 5.7e-83 312.8 585 78.1
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 6.3e-82 309.3 585 77.1
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.4e-81 308.1 585 70.1
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 3.1e-81 307.0 585 69.7
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 7.0e-81 305.8 583 76.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.0e-80 304.3 585 70.4
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.7e-79 301.2 585 73.3
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 8.5e-79 298.9 582 66.0
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.5e-78 296.2 582 69.8
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 7.2e-78 295.8 564 78.5
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 2.1e-77 294.3 585 72.3
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.7e-77 293.9 585 68.9
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 2.3e-76 290.8 584 73.3
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 3.0e-76 290.4 630 72.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 3.0e-76 290.4 585 72.3
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 6.8e-76 289.3 586 78.8
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 2.6e-75 287.3 583 71.2
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 9.7e-75 285.4 584 81.7
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.3e-74 285.0 583 66.4
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.7e-74 284.6 581 68.8
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 2.2e-74 284.3 582 69.8
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.1e-73 282.0 583 77.5
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.4e-73 281.6 500 72.8
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 4.1e-73 280.0 584 64.4
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.2e-72 278.5 592 75.5
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 3.5e-72 276.9 588 65.6
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 3.5e-72 276.9 562 78.6
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 5.9e-72 276.2 583 65.5
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 7.7e-72 275.8 587 72.9
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.5e-70 271.6 585 65.5
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.9e-70 271.2 585 64.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.9e-70 271.2 585 63.9
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 4.2e-70 270.0 581 70.7
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 5.5e-70 269.6 416 79.3
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 1.0e-68 265.4 583 78.9
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.4e-68 265.0 555 65.8
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 2.3e-68 264.2 584 64.2
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.5e-67 261.5 587 63.4
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 3.4e-67 260.4 585 62.4
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 5.7e-67 259.6 562 73.7
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 7.5e-67 259.2 602 71.8
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 2.8e-66 257.3 585 63.9
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 4.8e-66 256.5 590 63.1
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.1e-65 255.4 574 57.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.4e-65 255.0 583 49.7
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.7e-63 248.1 655 55.0
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 6.6e-63 246.1 430 76.0
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.9e-62 244.6 500 70.8
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.4e-60 238.4 590 61.2
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.3e-58 231.9 590 62.5
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 3.7e-58 230.3 583 66.9
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 4.9e-58 229.9 410 71.7
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 6.3e-58 229.6 598 60.5
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.1e-57 228.8 585 60.0
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 4.5e-56 223.4 585 63.8
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 1.0e-55 222.2 431 74.5
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.3e-55 221.9 498 60.0
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.0e-55 219.9 315 58.4
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.6e-53 214.9 643 54.7
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.0e-52 212.2 562 61.2
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 4.4e-51 206.8 588 64.5
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 1.2e-48 198.7 575 64.5
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.6e-48 198.4 500 63.4
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 5.6e-46 189.9 594 59.1
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 9.5e-46 189.1 563 65.7
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 6.2e-45 186.4 315 53.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 8.0e-45 186.0 222 62.2
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.2e-44 183.3 323 63.8
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 5.1e-39 166.8 558 34.1
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.6e-37 161.8 558 52.7
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.6e-37 160.6 591 51.1
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 8.1e-37 159.5 517 61.7
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.4e-36 158.7 585 63.9
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 4.9e-34 150.2 198 65.7
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 2.1e-32 144.8 244 50.0
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.7e-31 141.7 543 64.5
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 7.3e-30 136.3 75 90.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 7.3e-30 136.3 75 90.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 2.1e-29 134.8 75 89.3
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 4.7e-29 133.7 75 89.3
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.6e-24 118.6 75 76.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 8.7e-23 112.8 94 59.6
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 6.2e-21 106.7 98 61.2
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.3e-18 99.0 235 41.7
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.4e-17 93.6 79 63.3
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 2.3e-15 88.2 53 77.4
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 2.3e-15 88.2 102 75.5
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 5.1e-15 87.0 60 68.3
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.5e-14 85.5 63 66.7
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 5.6e-14 83.6 75 50.7
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 7.3e-14 83.2 106 77.4
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 7.3e-14 83.2 106 77.4
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 7.3e-14 83.2 106 77.4
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.3e-13 82.4 46 89.1
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 3.4e-11 74.3 114 43.0
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.3e-10 72.4 98 67.3
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 4.2e-09 67.4 226 54.4
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 3.0e-07 61.2 39 74.4
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 9.6e-06 56.2 75 37.3


User provided reference genes

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