Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 2.2e-129 465.7 244 100.0
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 3.3e-117 425.2 244 92.2
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 3.3e-117 425.2 244 92.2
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 3.7e-92 342.0 246 73.6
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.3e-86 323.6 247 70.4
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.3e-86 322.8 247 70.4
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-85 320.5 247 69.6
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 5.7e-85 318.2 247 69.2
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.2e-84 316.2 247 68.8
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 3.7e-84 315.5 247 69.6
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 4.8e-84 315.1 246 68.3
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 4.8e-84 315.1 247 69.2
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 6.3e-84 314.7 248 69.0
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.9e-81 305.8 246 66.3
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 2.5e-80 302.8 246 65.9
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 4.6e-79 298.5 243 64.6
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 3.0e-78 295.8 246 64.6
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 2.0e-74 283.1 247 64.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 6.5e-73 278.1 246 63.4
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.4e-72 276.9 240 64.2
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 5.5e-72 275.0 247 63.6
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 5.5e-72 275.0 234 63.2
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.5e-72 275.0 244 59.4
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 7.2e-72 274.6 247 63.6
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 7.2e-72 274.6 253 63.2
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 7.2e-72 274.6 239 64.4
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 7.2e-72 274.6 237 64.6
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 9.4e-72 274.2 252 62.3
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.7e-71 272.7 252 62.3
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.8e-70 270.0 244 61.5
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 1.8e-70 270.0 238 63.4
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 2.3e-70 269.6 236 64.4
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 3.9e-70 268.9 238 63.0
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 6.7e-70 268.1 236 64.0
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.0e-69 266.5 239 62.8
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.6e-69 266.2 231 63.2
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 7.4e-69 264.6 253 61.7
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 9.7e-69 264.2 236 62.7
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 9.7e-69 264.2 234 62.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.3e-68 263.8 238 62.2
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.3e-68 263.8 245 60.4
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.3e-68 263.8 244 61.5
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.7e-68 263.5 246 59.3
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.7e-68 263.5 244 60.7
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.2e-68 263.1 252 61.1
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 6.3e-68 261.5 246 60.2
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 6.3e-68 261.5 242 59.9
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 8.2e-68 261.2 231 63.2
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 8.2e-68 261.2 254 57.1
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.1e-67 260.8 249 59.0
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.4e-67 259.6 251 56.2
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 2.4e-67 259.6 243 58.4
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 3.1e-67 259.2 251 59.0
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 4.1e-67 258.8 243 58.0
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 4.1e-67 258.8 246 60.6
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 5.3e-67 258.5 249 58.2
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 7.0e-67 258.1 251 55.8
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 9.1e-67 257.7 247 58.7
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 9.1e-67 257.7 236 61.4
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 9.1e-67 257.7 252 57.5
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.5e-66 256.9 245 61.6
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.0e-66 256.5 245 61.6
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 3.4e-66 255.8 253 55.3
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 5.9e-66 255.0 244 57.4
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 5.9e-66 255.0 237 59.5
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 5.9e-66 255.0 236 59.7
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 7.7e-66 254.6 249 57.8
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 7.7e-66 254.6 257 55.3
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.3e-65 253.8 244 59.4
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.7e-65 253.4 252 59.1
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 3.8e-65 252.3 244 58.2
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 3.8e-65 252.3 254 55.1
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 6.5e-65 251.5 238 59.7
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.1e-64 250.8 256 57.8
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 2.5e-64 249.6 246 57.3
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 4.2e-64 248.8 238 58.8
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 5.5e-64 248.4 247 56.3
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 5.5e-64 248.4 249 56.2
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 1.2e-63 247.3 239 59.4
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 2.1e-63 246.5 249 57.8
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 3.6e-63 245.7 248 56.0
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 3.6e-63 245.7 248 56.0
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 3.6e-63 245.7 236 58.9
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 3.6e-63 245.7 236 58.9
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.8e-62 243.4 256 54.7
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.8e-62 243.4 244 57.4
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.9e-62 242.3 233 58.8
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 3.9e-62 242.3 220 62.7
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 6.7e-62 241.5 244 57.4
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 2.6e-61 239.6 247 57.5
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 7.4e-61 238.0 229 58.1
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 1.7e-60 236.9 256 53.9
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 3.7e-60 235.7 234 56.4
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 6.3e-60 235.0 246 55.7
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 6.3e-60 235.0 241 59.3
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.4e-59 233.0 246 52.0
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.1e-56 224.2 243 54.3
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 9.4e-56 221.1 226 58.0
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 1.0e-54 217.6 255 50.6
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 5.2e-54 215.3 232 54.7
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.2e-53 214.2 251 52.2
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 9.7e-53 211.1 235 52.3
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 9.1e-51 204.5 196 57.7
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 2.0e-50 203.4 250 50.0
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 5.0e-49 198.7 249 49.8
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 5.0e-49 198.7 252 50.4
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 1.1e-48 197.6 239 50.2
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.9e-48 196.8 249 49.4
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.9e-48 196.8 249 49.4
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 3.2e-48 196.1 251 47.4
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 9.4e-48 194.5 236 50.0
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.4e-43 180.6 131 67.9
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.2e-42 177.6 184 58.2
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 9.5e-40 167.9 212 50.0
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.5e-34 149.4 124 62.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 2.3e-30 136.7 131 56.5
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 5.0e-25 119.0 184 43.5
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.9e-24 117.1 220 36.4
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.3e-20 104.4 129 50.4
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 1.1e-19 101.3 79 68.4
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 3.2e-19 99.8 75 65.3
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 3.5e-18 96.3 129 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 4.6e-18 95.9 245 32.2
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 9.5e-16 88.2 86 52.3
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 2.8e-15 86.7 139 41.0
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 9.9e-13 78.2 62 58.1
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 2.4e-11 73.6 121 40.5
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 7.1e-11 72.0 101 48.5
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 1.9e-08 63.9 84 45.2


User provided reference genes

Program Settings