Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 8.4e-178 627.1 359 100.0
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.7e-160 568.9 349 90.0
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.2e-118 430.6 366 75.1
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.4e-118 428.7 267 82.4
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.4e-116 423.7 267 79.8
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 6.5e-114 414.8 266 79.3
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.5e-113 413.7 260 81.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.9e-113 413.3 266 78.9
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 2.5e-113 412.9 261 80.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.2e-113 412.1 266 78.9
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 5.5e-113 411.8 267 78.3
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 7.2e-113 411.4 258 81.0
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 9.4e-113 411.0 363 65.0
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.2e-112 410.6 264 78.4
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.1e-112 409.8 267 78.7
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.1e-112 409.8 268 80.2
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 2.1e-112 409.8 265 80.4
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.7e-112 408.7 266 78.2
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 8.0e-112 407.9 358 64.8
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 6.8e-111 404.8 258 79.8
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.8e-111 404.4 265 77.0
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.2e-110 404.1 352 63.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.2e-110 404.1 262 79.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.0e-110 403.3 266 78.2
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.6e-110 402.9 266 78.2
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.6e-110 402.9 264 77.7
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 5.7e-110 401.7 366 63.9
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 9.8e-110 401.0 252 81.7
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.3e-109 400.6 286 75.2
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.3e-109 400.6 359 67.1
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.8e-109 399.4 264 76.9
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.8e-109 398.7 263 75.7
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 8.3e-109 397.9 256 78.9
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-108 397.5 261 77.8
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.8e-108 396.7 276 74.3
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.8e-108 396.7 259 78.0
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 4.1e-108 395.6 262 77.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 5.4e-108 395.2 261 75.9
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.6e-107 393.7 256 77.7
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.7e-107 392.9 256 77.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 2.7e-107 392.9 262 76.3
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.0e-106 391.0 264 76.1
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.3e-106 389.8 263 75.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 2.9e-106 389.4 264 75.8
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 3.8e-106 389.0 265 76.6
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 5.0e-106 388.7 266 73.3
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-105 387.1 263 74.5
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 4.2e-105 385.6 262 75.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 7.2e-105 384.8 258 75.2
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.2e-104 384.0 350 62.9
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.2e-104 384.0 265 74.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.6e-104 383.6 263 73.8
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.1e-104 383.3 259 73.7
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.8e-104 382.9 265 74.3
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 3.6e-104 382.5 257 76.3
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 8.0e-104 381.3 265 72.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 8.0e-104 381.3 256 75.8
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 8.0e-104 381.3 257 75.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.8e-103 380.2 256 75.4
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.0e-103 379.0 263 71.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 4.0e-103 379.0 266 73.3
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.2e-102 377.5 252 75.8
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.0e-102 376.7 267 71.2
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 3.4e-102 375.9 265 71.3
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 3.4e-102 375.9 265 71.3
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.4e-102 375.6 260 73.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 4.4e-102 375.6 265 73.2
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 5.7e-102 375.2 259 71.8
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.5e-102 374.8 266 71.1
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 9.8e-102 374.4 264 72.7
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.3e-101 374.0 256 73.0
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.2e-101 373.2 264 72.3
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.8e-101 372.9 250 74.0
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.8e-101 372.9 267 71.2
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.1e-100 370.9 364 59.6
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.1e-100 370.9 258 73.3
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.4e-100 370.5 260 72.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.1e-100 369.4 262 71.8
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.0e-100 368.2 262 71.8
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 9.2e-100 367.9 261 70.9
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.2e-99 367.5 261 71.3
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.6e-99 367.1 258 70.9
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.0e-99 366.7 258 72.9
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 7.8e-99 364.8 250 71.2
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 2.9e-98 362.8 250 71.2
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.9e-98 362.8 251 70.9
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.5e-97 359.8 332 61.1
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 3.3e-97 359.4 258 71.3
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 7.3e-97 358.2 266 69.9
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.6e-96 357.1 256 68.0
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 5.2e-95 352.1 255 67.5
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.2e-94 350.9 258 70.2
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 5.0e-90 335.5 258 65.1
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.5e-89 333.2 258 64.3
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 4.3e-89 332.4 261 64.4
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-88 330.9 257 64.2
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-88 330.9 257 64.6
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 4.3e-81 305.8 219 71.7
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 4.7e-80 302.4 257 64.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 6.2e-80 302.0 205 73.2
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 3.5e-75 286.2 262 58.8
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 6.8e-71 271.9 260 58.1
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.3e-66 257.7 263 49.4
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.9e-66 256.1 262 50.8
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 8.7e-66 255.0 257 49.0
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 2.0e-62 243.8 172 73.3
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 9.6e-57 224.9 249 47.8
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.3e-56 224.6 142 76.8
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.9e-53 212.6 173 65.3
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-49 201.4 193 57.5
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.6e-49 199.1 201 49.3
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.1e-48 195.3 127 77.2
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.2e-46 191.4 173 60.1
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 2.9e-45 186.8 148 63.5
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.7e-40 169.9 170 55.9
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 6.2e-40 169.1 174 57.5
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.5e-38 164.5 190 53.2
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.4e-38 163.3 117 70.1
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.1e-36 158.3 117 68.4
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 6.7e-34 149.1 102 77.5
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.9e-33 147.5 103 72.8
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 7.4e-33 145.6 104 66.3
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 5.9e-30 136.0 115 61.7
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.8e-29 133.3 74 89.2
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 9.4e-28 128.6 90 66.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.7e-27 127.1 74 78.4
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 3.0e-26 123.6 81 76.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.5e-25 121.3 89 69.7
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 8.5e-21 105.5 253 28.1
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 8.5e-21 105.5 85 63.5
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.5e-20 102.8 80 58.8
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 5.1e-18 96.3 68 67.6
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.0e-17 94.4 56 83.9
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.3e-17 93.6 50 90.0
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 1.3e-16 91.7 242 28.1
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 2.8e-16 90.5 99 55.6
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.1e-15 88.6 56 76.8
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.1e-15 87.0 98 51.0
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 9.1e-15 85.5 71 66.2
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.0e-14 84.3 130 36.2
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.2e-12 77.0 126 38.1
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.6e-11 74.7 154 33.8
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 8.0e-11 72.4 144 31.9
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 5.2e-10 69.7 48 72.9
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.6e-09 67.4 39 74.4


User provided reference genes

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