Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 2.8e-52 208.4 107 100.0
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 9.3e-24 113.6 68 86.8
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 2.1e-23 112.5 68 85.3
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 1.3e-17 93.2 68 69.1
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 1.6e-15 86.3 64 64.1
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 2.7e-15 85.5 66 66.7
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 4.6e-15 84.7 62 71.0
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 3.9e-14 81.6 60 78.3
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 6.7e-14 80.9 60 70.0
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.1e-13 80.1 77 54.5
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.9e-13 79.3 60 66.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 3.3e-13 78.6 61 62.3
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 3.3e-13 78.6 60 65.0
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 4.3e-13 78.2 77 53.2
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 5.6e-13 77.8 62 66.1
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 5.6e-13 77.8 68 61.8
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 7.4e-13 77.4 62 62.9
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 7.4e-13 77.4 75 53.3
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 9.6e-13 77.0 62 61.3
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 9.6e-13 77.0 77 53.2
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 1.3e-12 76.6 75 53.3
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 1.3e-12 76.6 63 66.7
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 2.1e-12 75.9 77 51.9
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 2.1e-12 75.9 77 51.9
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 2.8e-12 75.5 58 65.5
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 2.8e-12 75.5 64 62.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 3.7e-12 75.1 62 66.1
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 3.7e-12 75.1 63 66.7
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 1.1e-11 73.6 63 63.5
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.1e-11 73.6 63 63.5
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.1e-11 73.6 63 63.5
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.1e-11 73.6 63 63.5
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.1e-11 73.6 63 63.5
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.4e-11 73.2 76 55.3
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 1.4e-11 73.2 77 49.4
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 1.4e-11 73.2 65 55.4
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 1.8e-11 72.8 77 53.2
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 3.1e-11 72.0 62 56.5
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 5.3e-11 71.2 62 56.5
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 9.0e-11 70.5 62 54.8
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 9.0e-11 70.5 77 49.4
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 1.2e-10 70.1 67 50.7
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 2.0e-10 69.3 60 53.3
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 2.0e-10 69.3 63 57.1
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 2.0e-10 69.3 63 57.1
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 2.6e-10 68.9 67 52.2
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 2.6e-10 68.9 62 54.8
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 2.6e-10 68.9 62 54.8
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 3.4e-10 68.6 67 50.7
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 3.4e-10 68.6 67 50.7
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 3.4e-10 68.6 63 55.6
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 3.4e-10 68.6 63 55.6
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 3.4e-10 68.6 67 50.7
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 3.4e-10 68.6 67 50.7
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 3.4e-10 68.6 61 55.7
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 5.8e-10 67.8 62 54.8
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 5.8e-10 67.8 60 56.7
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 7.6e-10 67.4 79 46.8
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 7.6e-10 67.4 73 49.3
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 7.6e-10 67.4 60 56.7
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.0e-09 67.0 65 52.3
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.3e-09 66.6 62 54.8
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.7e-09 66.2 67 55.2
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 2.2e-09 65.9 58 62.1
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 4.9e-09 64.7 60 53.3
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 4.9e-09 64.7 64 56.2
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 6.5e-09 64.3 61 55.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 8.4e-09 63.9 63 50.8
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 8.4e-09 63.9 63 55.6
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 1.1e-08 63.5 60 53.3
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.4e-08 63.2 65 53.8
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 1.9e-08 62.8 64 50.0
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 3.2e-08 62.0 63 49.2
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 9.3e-08 60.5 62 54.8
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 1.6e-07 59.7 62 46.8
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 1.6e-07 59.7 57 54.4
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 4.6e-07 58.2 55 50.9
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 4.6e-07 58.2 63 54.0
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 1.0e-06 57.0 64 45.3
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 3.9e-06 55.1 66 48.5
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 5.1e-06 54.7 58 48.3
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 8.7e-06 53.9 68 44.1
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 8.7e-06 53.9 68 48.5


User provided reference genes

Program Settings