Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.8e-152 541.2 347 100.0
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.2e-136 490.3 294 91.8
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 8.5e-135 484.2 317 85.5
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.4e-124 450.3 296 86.8
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.5e-118 430.3 296 83.4
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.6e-117 425.6 294 84.0
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 6.1e-117 424.9 296 83.4
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.5e-115 417.9 303 81.5
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.2e-114 416.4 296 81.4
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.8e-114 416.0 303 81.2
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 1.2e-112 410.6 325 75.4
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.6e-112 410.2 319 77.7
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 3.5e-112 409.1 317 75.7
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 8.5e-111 404.4 296 81.1
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.9e-110 403.3 294 78.2
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 2.1e-109 399.8 298 78.5
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.8e-108 396.7 324 72.5
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 5.2e-108 395.2 319 74.9
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 5.2e-108 395.2 294 80.6
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 6.8e-108 394.8 320 73.1
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.2e-107 394.0 293 78.2
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.0e-107 393.3 324 72.8
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 5.7e-107 391.7 294 76.9
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 3.7e-106 389.0 295 77.6
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 4.5e-104 382.1 296 74.0
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 5.9e-104 381.7 319 76.5
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.7e-104 381.3 292 78.1
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.3e-103 380.6 296 76.7
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.7e-103 380.2 296 76.4
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 8.6e-103 377.9 296 75.7
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 3.3e-102 375.9 321 70.7
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 4.2e-102 375.6 295 76.9
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.6e-101 373.6 296 75.3
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.6e-101 373.6 298 74.5
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 2.1e-101 373.2 297 76.1
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 6.1e-101 371.7 298 76.5
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 8.0e-101 371.3 277 77.3
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 3.4e-99 365.9 332 68.7
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 2.2e-98 363.2 300 75.7
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 3.7e-98 362.5 320 70.0
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 2.7e-96 356.3 267 77.9
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 3.5e-96 355.9 295 72.5
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 3.5e-96 355.9 301 72.1
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 5.9e-96 355.1 294 72.8
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-94 350.9 298 73.5
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.2e-93 347.4 325 66.5
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.6e-93 347.1 296 71.6
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 2.8e-93 346.3 296 72.0
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 3.6e-93 345.9 301 72.4
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 8.0e-93 344.7 298 72.8
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.4e-92 344.0 293 70.3
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.3e-92 343.2 297 71.4
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 4.0e-92 342.4 299 72.2
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 7.5e-91 338.2 292 71.9
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 4.1e-89 332.4 298 66.1
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 4.1e-89 332.4 294 69.7
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 2.0e-88 330.1 299 68.9
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 2.7e-88 329.7 298 67.4
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.3e-87 327.4 298 65.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.3e-87 326.6 240 77.9
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 5.6e-86 322.0 304 69.1
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 9.5e-86 321.2 300 65.7
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 3.6e-85 319.3 324 61.4
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.6e-85 319.3 297 65.0
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 8.0e-85 318.2 296 66.2
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 8.0e-85 318.2 287 69.3
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.1e-84 317.8 296 68.2
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.8e-84 315.1 297 64.6
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 8.9e-84 314.7 298 65.4
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 8.9e-84 314.7 312 63.5
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 2.6e-83 313.2 298 65.1
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.4e-83 312.8 265 72.8
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 5.8e-83 312.0 298 66.8
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 7.5e-83 311.6 294 68.4
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 4.9e-82 308.9 300 67.3
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 8.3e-82 308.1 296 64.2
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 3.2e-81 306.2 300 63.3
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 3.2e-81 306.2 298 62.8
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 5.4e-81 305.4 297 63.3
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.6e-80 303.9 297 64.6
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 4.6e-80 302.4 299 61.9
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.9e-79 299.3 281 67.6
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.1e-79 298.9 281 67.3
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.9e-78 297.0 273 66.3
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 8.1e-77 291.6 298 62.1
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 3.1e-76 289.7 295 65.4
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 5.2e-76 288.9 299 63.5
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.2e-75 287.7 281 66.2
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.2e-72 277.7 227 74.9
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.5e-72 276.2 219 71.7
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 8.6e-71 271.6 296 59.5
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 1.9e-70 270.4 277 60.3
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 7.3e-70 268.5 299 58.5
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.1e-69 266.9 218 71.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 3.6e-69 266.2 294 57.5
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 8.1e-69 265.0 291 59.5
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 8.1e-69 265.0 294 57.1
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.1e-68 264.6 296 58.8
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.1e-68 263.1 296 58.4
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 4.0e-68 262.7 294 56.8
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 5.2e-68 262.3 296 57.4
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.2e-68 262.3 297 57.9
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 3.4e-67 259.6 314 57.6
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.1e-65 254.6 296 56.8
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.1e-65 254.6 296 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 3.5e-64 249.6 232 63.8
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 4.6e-64 249.2 204 69.6
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.0e-63 248.1 193 76.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.0e-63 248.1 251 59.4
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 8.7e-63 245.0 211 67.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 8.7e-63 245.0 211 67.8
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.1e-62 244.6 303 53.1
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.5e-62 244.2 307 51.5
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.5e-62 243.4 202 69.8
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 5.6e-62 242.3 258 61.2
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.5e-59 234.2 305 51.1
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 9.9e-59 231.5 239 62.8
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 2.2e-58 230.3 244 59.0
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 8.7e-55 218.4 224 59.8
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.5e-54 217.6 250 56.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.3e-53 214.5 315 47.6
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 1.4e-52 211.1 211 61.6
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 3.4e-51 206.5 294 50.0
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.2e-50 203.8 247 55.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 2.7e-48 196.8 236 52.5
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 3.5e-48 196.4 236 52.5
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.0e-47 193.4 167 68.3
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 5.3e-44 182.6 294 48.3
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 6.9e-44 182.2 297 49.5
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.5e-43 181.0 165 64.8
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.2e-42 177.2 249 50.2
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 4.9e-42 176.0 155 65.8
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 2.5e-38 163.7 151 68.2
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 2.0e-27 127.5 128 62.5
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 5.5e-25 119.4 138 52.2
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 5.7e-22 109.4 99 69.7
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.4e-17 94.7 182 39.6
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 2.6e-14 84.0 92 58.7
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 3.5e-11 73.6 210 31.9
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.2e-10 70.9 56 75.0
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.8e-10 70.1 57 68.4
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.1e-09 68.6 57 68.4
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.9e-09 67.8 62 71.0
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 2.5e-09 67.4 172 32.0
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.2e-09 65.9 57 64.9
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 7.2e-09 65.9 81 54.3
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 9.4e-09 65.5 57 64.9
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 2.3e-07 60.8 69 52.2


User provided reference genes

Program Settings