Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.3e-160 569.7 291 100.0
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 2.7e-150 535.4 291 94.2
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 6.4e-144 514.2 291 89.7
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 7.1e-143 510.8 291 88.0
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 6.3e-115 417.9 291 72.5
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 5.5e-95 351.7 291 62.9
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.6e-94 350.1 291 62.5
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.8e-90 336.7 291 60.1
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 2.4e-90 336.3 291 58.4
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 1.6e-89 333.6 291 59.8
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 3.8e-88 328.9 291 57.4
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.9e-87 326.6 291 57.4
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 2.5e-87 326.2 290 56.9
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 1.6e-86 323.6 291 59.5
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 4.7e-86 322.0 291 59.8
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 2.3e-85 319.7 291 59.1
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 4.0e-85 318.9 291 56.7
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 6.7e-85 318.2 291 56.4
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 9.7e-84 314.3 294 57.5
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 3.7e-83 312.4 291 56.4
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 4.8e-83 312.0 295 58.0
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 1.8e-82 310.1 291 55.0
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 7.0e-82 308.1 292 55.8
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 7.0e-82 308.1 298 57.4
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 4.5e-81 305.4 298 54.0
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.0e-80 304.3 292 55.1
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 2.2e-80 303.1 293 54.3
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 3.8e-80 302.4 292 55.5
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 5.5e-79 298.5 289 52.9
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.6e-78 297.0 284 55.6
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 4.7e-78 295.4 293 53.9
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 4.7e-78 295.4 291 54.6
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 1.0e-77 294.3 291 53.3
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 1.0e-77 294.3 278 56.8
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 4.0e-77 292.4 293 52.9
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 4.0e-77 292.4 289 52.2
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 1.2e-76 290.8 292 53.4
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 2.0e-76 290.0 292 53.1
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 4.4e-76 288.9 255 59.2
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.4e-76 288.9 296 55.7
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 4.4e-76 288.9 293 52.2
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 6.3e-75 285.0 296 54.7
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.4e-74 283.9 289 50.9
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.8e-74 283.5 289 50.5
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 2.4e-74 283.1 279 56.3
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 9.1e-74 281.2 293 52.6
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.9e-73 278.5 296 54.4
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 7.7e-73 278.1 292 52.4
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 5.0e-72 275.4 291 51.9
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 2.1e-70 270.0 264 56.1
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 8.9e-69 264.6 292 50.0
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 2.2e-67 260.0 401 40.4
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 3.7e-67 259.2 244 54.5
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 4.9e-67 258.8 226 59.7
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 7.8e-65 251.5 290 49.3
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 3.9e-64 249.2 291 51.2
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 1.3e-59 234.2 269 49.4
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 9.2e-58 228.0 225 53.3
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 7.8e-57 224.9 227 53.3
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 3.6e-46 189.5 148 64.2
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 2.3e-45 186.8 191 48.7
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 8.6e-40 168.3 180 48.3
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 5.6e-39 165.6 164 54.3
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 1.8e-37 160.6 169 50.3
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 3.4e-36 156.4 174 50.0
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.2e-34 149.8 151 53.6
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.2e-34 149.8 151 53.6
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 1.6e-30 137.5 112 59.8
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 3.1e-29 133.3 152 48.0
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.4e-26 122.5 109 59.6
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.4e-26 122.5 109 59.6
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 5.1e-24 115.9 109 52.3
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 5.1e-24 115.9 298 30.2
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.9e-23 114.0 297 29.6
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 4.3e-23 112.8 297 30.3
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 4.8e-22 109.4 270 29.6
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.1e-21 108.2 270 29.6
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 1.8e-21 107.5 273 29.7
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 2.4e-21 107.1 299 26.4
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 1.2e-20 104.8 274 28.1
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 1.5e-20 104.4 273 30.8
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 5.8e-20 102.4 294 28.6
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 9.9e-20 101.7 296 26.7
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 1.3e-19 101.3 274 29.6
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 2.9e-19 100.1 303 26.7
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 4.9e-19 99.4 249 31.3
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 4.9e-19 99.4 275 28.7
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 4.9e-19 99.4 274 29.2
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 1.1e-18 98.2 301 27.6
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 1.1e-18 98.2 290 26.2
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 3.2e-18 96.7 281 27.4
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 3.2e-18 96.7 274 29.2
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 4.2e-18 96.3 270 27.8
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 5.4e-18 95.9 274 28.5
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 1.6e-17 94.4 279 28.7
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 1.6e-17 94.4 294 27.6
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 2.1e-17 94.0 268 26.9
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 6.0e-17 92.4 276 26.1
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 7.9e-17 92.0 272 27.2
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 7.9e-17 92.0 266 26.7
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 1.3e-16 91.3 264 29.2
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 1.8e-16 90.9 263 27.8
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 1.8e-16 90.9 273 29.3
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 2.3e-16 90.5 278 26.3
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 3.0e-16 90.1 273 26.4
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 3.0e-16 90.1 261 29.9
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 3.9e-16 89.7 262 27.1
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 3.9e-16 89.7 267 26.2
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 3.9e-16 89.7 301 26.9
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 5.1e-16 89.4 262 27.9
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 5.1e-16 89.4 292 28.8
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 5.1e-16 89.4 288 27.4
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 6.7e-16 89.0 276 28.3
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 6.7e-16 89.0 278 26.6
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 6.7e-16 89.0 282 26.2
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 6.7e-16 89.0 294 27.9
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 8.7e-16 88.6 262 27.9
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 8.7e-16 88.6 262 27.9
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 8.7e-16 88.6 266 27.8
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 8.7e-16 88.6 279 27.2
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 1.1e-15 88.2 265 27.9
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 1.5e-15 87.8 264 26.9
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 1.5e-15 87.8 306 24.2
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 1.9e-15 87.4 264 26.9
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 2.5e-15 87.0 265 28.7
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 4.3e-15 86.3 272 26.8
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 5.6e-15 85.9 259 27.4
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 7.4e-15 85.5 302 26.2
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 9.6e-15 85.1 312 25.0
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 9.6e-15 85.1 280 26.4
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 1.3e-14 84.7 265 28.7
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 1.3e-14 84.7 298 27.2
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 1.6e-14 84.3 312 25.0
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 2.1e-14 84.0 300 26.0
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 3.7e-14 83.2 259 27.4
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 4.8e-14 82.8 312 24.4
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 6.2e-14 82.4 253 27.3
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 6.2e-14 82.4 296 27.7
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 1.1e-13 81.6 259 27.4
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 1.1e-13 81.6 281 25.6
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 1.1e-13 81.6 229 28.4
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 1.4e-13 81.3 251 28.7
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 1.8e-13 80.9 277 26.0
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 2.4e-13 80.5 281 24.9
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 3.1e-13 80.1 287 25.8
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 5.3e-13 79.3 263 25.9
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 5.3e-13 79.3 256 27.7
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.2e-12 78.2 205 29.8
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 1.2e-12 78.2 307 25.1
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 1.5e-12 77.8 292 26.4
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.0e-12 77.4 240 26.2
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 2.6e-12 77.0 285 28.1
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 2.6e-12 77.0 282 22.7
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 3.4e-12 76.6 282 25.2
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 4.5e-12 76.3 295 27.8
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 4.5e-12 76.3 273 26.0
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 5.8e-12 75.9 110 38.2
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.3e-11 74.7 134 35.1
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 1.7e-11 74.3 280 25.4
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.7e-11 74.3 302 25.5
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 2.2e-11 73.9 274 24.8
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 2.2e-11 73.9 280 24.6
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 6.5e-11 72.4 131 33.6
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 2.5e-10 70.5 301 24.6
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 4.2e-10 69.7 250 28.8
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 9.3e-10 68.6 296 24.7
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 9.3e-10 68.6 271 26.9
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 1.2e-09 68.2 268 25.4
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 1.6e-09 67.8 264 25.0
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 4.6e-09 66.2 291 26.1
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.3e-08 64.7 305 24.6
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 1.8e-08 64.3 264 25.4
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 2.3e-08 63.9 141 29.8
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 3.0e-08 63.5 123 30.9
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 3.3e-07 60.1 270 25.9


User provided reference genes

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