Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1748.4 846 100.0
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1579.7 848 90.6
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1394.0 852 78.4
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1331.2 850 74.1
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1313.9 850 73.9
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1311.6 850 73.3
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1295.0 850 72.0
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1290.0 850 72.4
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1287.7 849 71.6
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1283.1 850 71.5
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1283.1 851 71.7
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1279.6 850 72.1
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1279.2 851 72.3
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1277.3 852 71.6
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1275.4 849 71.6
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1273.8 851 71.2
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1271.5 851 71.1
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1271.5 852 71.0
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1267.3 851 70.7
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1265.8 851 70.7
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1256.9 851 70.3
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1256.5 848 70.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1250.0 859 68.9
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1247.6 851 68.7
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 879 68.1
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1244.2 850 69.9
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1243.4 809 73.8
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1236.9 848 69.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1236.9 848 69.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1234.9 852 69.4
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1230.3 851 68.3
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1229.9 885 67.6
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1226.8 867 67.7
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1224.5 851 68.4
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1223.8 851 69.3
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1221.8 859 68.5
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1219.1 824 70.4
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1218.8 853 67.6
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 850 68.0
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1216.1 849 67.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1215.3 851 67.9
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1214.1 852 68.2
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1213.7 851 68.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1212.2 853 67.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1212.2 849 67.6
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1211.1 849 68.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1207.2 846 68.2
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 969 61.2
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1201.0 848 67.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1200.7 848 66.4
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1198.3 853 67.2
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1194.9 850 66.1
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1192.2 811 69.8
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1192.2 870 66.2
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 850 67.5
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 853 67.6
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1186.8 846 66.7
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1186.0 850 65.5
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1182.9 855 66.5
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1178.7 849 65.8
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1176.8 850 65.8
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1176.8 851 65.9
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1174.1 847 65.3
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 858 65.7
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1164.4 851 65.9
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1163.7 850 65.1
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1163.7 853 65.7
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1163.3 853 65.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1163.3 851 65.5
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 881 63.3
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1159.8 860 65.1
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 855 65.6
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1158.3 854 65.6
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1157.5 847 64.9
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1156.0 850 64.9
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1155.6 850 65.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 847 64.3
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1154.8 858 64.6
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1145.2 887 62.9
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1142.5 855 64.8
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1133.6 854 64.5
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 867 63.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 848 63.6
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 866 61.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1114.8 842 64.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1104.7 847 62.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1103.6 763 69.1
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1101.3 854 61.9
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1100.5 854 63.7
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1097.0 725 71.0
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 910 60.1
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 751 66.7
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1075.1 833 61.5
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.7e-311 1072.4 853 60.3
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 8.7e-311 1070.1 771 64.9
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.5e-310 1068.5 766 63.2
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 5.7e-310 1067.4 779 64.3
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 5.7e-310 1067.4 716 69.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 7.5e-310 1067.0 857 62.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.3e-309 1066.2 778 63.6
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.3e-309 1063.9 878 59.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.8e-308 1062.4 770 64.5
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 2.2e-306 1055.4 771 64.1
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 2.5e-305 1052.0 775 63.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 9.4e-305 1050.0 771 63.8
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-302 1043.1 771 63.4
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.8e-300 1035.8 783 62.7
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.8e-300 1035.8 781 62.5
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 7.0e-300 1033.9 870 57.5
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.3e-298 1028.9 802 61.1
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 6.6e-298 1027.3 856 59.7
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.8e-292 1009.2 853 58.3
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.6e-291 1006.1 773 61.6
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 7.3e-289 997.3 845 57.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.6e-286 988.8 725 64.1
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.2e-272 943.3 805 57.6
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 4.1e-268 928.3 859 55.2
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 9.9e-254 880.6 652 64.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 9.3e-252 874.0 763 56.2
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 7.3e-249 864.4 855 50.6
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.8e-247 859.8 598 69.7
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.8e-242 843.2 790 53.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 8.7e-242 840.9 821 49.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 6.0e-235 818.1 858 47.7
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.7e-229 800.0 623 62.0
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 5.5e-228 795.0 788 50.0
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.0e-221 771.9 772 51.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 2.4e-215 753.1 652 58.3
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.4e-212 741.1 471 73.0
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.0e-203 711.4 434 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.8e-199 700.3 664 49.7
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.6e-193 679.9 429 72.0
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.1e-183 646.4 661 52.5
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.7e-181 640.6 475 63.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 2.5e-180 636.7 586 54.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 3.3e-180 636.3 532 57.3
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.2e-179 634.4 428 68.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 3.9e-165 586.3 865 38.4
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-157 561.2 580 52.4
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 4.3e-140 503.1 775 39.9
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.3e-136 491.5 320 69.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.4e-135 487.3 443 58.5
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 9.6e-132 475.3 405 57.8
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.3e-128 464.9 269 79.2
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.1e-125 453.0 338 64.5
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.7e-112 411.4 404 54.0
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 4.8e-107 393.3 389 53.5
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.5e-103 380.9 396 53.0
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-92 345.5 242 65.7
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 8.0e-86 322.8 527 36.1
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.9e-80 304.3 810 29.6
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 6.8e-69 266.5 202 62.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.7e-64 251.9 207 60.9
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.7e-59 235.3 169 63.3
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.9e-56 224.2 137 74.5
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 9.8e-52 209.5 103 87.4
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.6e-44 184.9 191 50.3
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.9e-43 181.4 100 77.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.3e-32 146.0 198 40.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.8e-30 138.3 82 72.0
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 7.1e-26 123.6 86 66.3
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.5e-23 115.9 69 73.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 5.6e-23 114.0 84 63.1
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.8e-22 111.7 123 51.2
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 5.8e-20 104.0 95 55.8
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 8.4e-19 100.1 47 97.9
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.1e-17 95.5 61 70.5
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.8e-16 92.4 82 54.9
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 6.7e-16 90.5 84 50.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.7e-14 84.7 95 46.3
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.8e-14 84.3 94 46.8
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.0e-13 81.3 37 89.2
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.2e-12 79.7 36 91.7
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 4.9e-11 74.3 44 75.0
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.8e-08 65.9 58 50.0
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.9e-07 62.4 69 46.4


User provided reference genes

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