Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.4e-107 392.1 188 100.0
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.7e-105 386.0 188 97.3
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.1e-99 365.2 188 93.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 84.0
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.9
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 79.8
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 79.3
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 79.8
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 79.8
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 79.8
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 79.8
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 79.3
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 79.3
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 79.3
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.2
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 79.8
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 79.8
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 79.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 79.3
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 78.7
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 79.3
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 79.3
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 79.3
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 79.3
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 78.7
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 78.2
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 79.3
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 78.2
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 79.3
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 78.2
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 78.7
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.7
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.7
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 78.7
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.7
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.7
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 7.0e-83 310.8 190 78.9
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 7.0e-83 310.8 190 78.9
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 77.1
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 77.7
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 78.7
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 78.2
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 77.1
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 77.1
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 77.1
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 77.1
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 77.1
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 77.1
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 77.7
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.6
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.0e-81 307.0 188 78.2
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.3e-81 306.6 188 77.7
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.3e-81 306.6 188 78.7
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 77.7
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 77.7
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.6
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 78.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.2e-81 305.8 188 77.1
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.2e-81 305.8 188 78.2
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.2e-81 305.8 185 76.8
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 77.7
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 77.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 77.1
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 3.8e-81 305.1 187 76.5
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 75.5
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 6.5e-81 304.3 188 76.1
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.5e-81 304.3 188 77.7
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 8.5e-81 303.9 185 76.2
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 8.5e-81 303.9 188 76.6
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 8.5e-81 303.9 188 75.5
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 8.5e-81 303.9 188 76.1
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.1e-80 303.5 188 77.1
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.1e-80 303.5 188 77.1
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.5e-80 303.1 188 75.5
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 2.5e-80 302.4 188 76.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 3.2e-80 302.0 188 76.6
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 76.6
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 4.2e-80 301.6 185 75.7
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 76.6
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 5.5e-80 301.2 188 75.0
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 5.5e-80 301.2 185 75.1
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 5.5e-80 301.2 185 75.1
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 76.6
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 185 75.1
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 77.7
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 77.7
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 77.7
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 75.0
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 9.4e-80 300.4 179 78.2
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 77.1
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.2e-79 300.1 188 76.1
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.2e-79 300.1 188 75.5
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 76.6
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 4.7e-79 298.1 188 77.7
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 75.5
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 3.0e-78 295.4 188 73.9
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 4.0e-78 295.0 188 75.0
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 4.0e-78 295.0 188 76.1
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 5.2e-78 294.7 188 74.5
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 6.7e-78 294.3 188 75.0
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 6.7e-78 294.3 188 75.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 6.7e-78 294.3 188 74.5
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 6.7e-78 294.3 189 76.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 8.8e-78 293.9 188 72.9
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 8.8e-78 293.9 189 75.1
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 76.2
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 4.4e-77 291.6 188 72.9
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.7e-76 289.7 180 76.1
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 2.2e-76 289.3 189 75.1
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.2e-76 289.3 188 73.9
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 2.8e-76 288.9 189 74.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 3.7e-76 288.5 188 75.0
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 4.8e-76 288.1 189 75.1
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 2.4e-75 285.8 188 71.8
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.1e-75 285.4 188 70.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.1e-75 285.0 188 71.3
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.3e-75 284.6 188 70.7
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.0e-74 282.7 169 76.3
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-73 280.0 174 75.9
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.2e-72 275.4 180 71.1
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 4.0e-70 268.5 188 67.6
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 4.4e-69 265.0 188 67.0
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.3e-68 263.5 190 67.4
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.2e-68 262.7 188 64.9
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 2.8e-68 262.3 190 66.3
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 4.8e-68 261.5 188 63.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 3.1e-67 258.8 189 66.1
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.2e-66 256.9 188 67.0
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.3e-65 253.4 188 64.4
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.5e-64 249.2 188 66.0
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.6e-63 246.5 179 65.9
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 2.1e-63 246.1 179 65.4
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 4.7e-63 245.0 187 61.5
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.7e-63 245.0 188 66.0
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 6.1e-63 244.6 187 61.0
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.8e-62 243.0 188 66.5
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 3.0e-62 242.3 187 61.5
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.0e-62 242.3 188 61.7
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.0e-62 242.3 188 61.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 4.0e-62 241.9 177 67.8
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-56 223.8 181 61.9
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 4.3e-56 221.9 188 54.8
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 5.6e-56 221.5 180 59.4
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 7.5e-53 211.1 165 65.5
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.5e-48 196.1 188 54.8
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 2.4e-43 179.5 187 48.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 5.4e-43 178.3 121 69.4
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 7.8e-42 174.5 115 72.2
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.7e-39 165.2 175 52.6
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 4.0e-38 162.2 109 72.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.4e-37 158.7 188 47.3
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 7.5e-37 157.9 139 56.8
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.3e-36 157.1 124 66.1
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.6e-34 150.2 85 83.5
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 9.2e-27 124.4 78 73.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 8.1e-23 111.3 92 65.2
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 2.6e-21 106.3 64 71.9
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.6e-07 60.5 35 80.0
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.1e-06 57.8 39 64.1


User provided reference genes

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