Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 0.0e+00 1224.9 656 100.0
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 0.0e+00 1114.8 688 88.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.0e-310 1068.5 656 87.5
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.3e-240 836.6 665 70.1
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.2e-238 830.1 660 69.5
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.6e-235 818.5 657 68.8
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.6e-235 818.5 656 69.4
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 8.0e-235 817.4 662 68.1
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.5e-233 813.1 662 68.3
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 5.7e-233 811.2 657 69.7
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.4e-231 805.8 660 68.2
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.9e-230 801.2 663 68.0
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.6e-227 793.1 649 66.4
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 3.6e-227 792.0 665 66.5
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.4e-226 790.0 654 67.0
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 2.0e-225 786.2 661 67.2
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 7.5e-225 784.3 645 65.9
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.8e-224 782.3 684 64.6
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.4e-223 780.0 684 64.3
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.8e-223 779.6 644 65.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 3.1e-223 778.9 684 64.3
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 9.2e-223 777.3 649 67.2
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.0e-222 776.2 662 65.9
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.7e-222 775.8 657 65.0
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 2.3e-221 772.7 660 64.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 2.9e-221 772.3 657 65.6
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 6.6e-221 771.2 659 64.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.9e-220 769.6 659 64.6
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.3e-220 768.8 661 66.6
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.7e-219 765.0 659 64.5
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 8.0e-219 764.2 657 64.2
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.0e-218 763.8 658 63.8
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.3e-216 756.9 666 63.2
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.2e-216 756.1 660 64.2
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 8.3e-216 754.2 663 64.4
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 1.4e-215 753.4 663 65.3
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.2e-214 750.4 663 65.0
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 4.6e-214 748.4 665 62.3
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 6.0e-214 748.0 663 64.0
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 3.9e-213 745.3 664 61.9
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.9e-212 743.0 587 67.0
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 2.1e-211 739.6 664 61.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 8.9e-210 734.2 649 63.2
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.2e-209 733.8 668 62.1
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.5e-209 733.4 668 62.6
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 7.5e-209 731.1 690 59.9
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.3e-208 730.3 660 61.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.7e-208 729.9 661 61.9
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.2e-208 729.6 628 61.8
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 3.7e-208 728.8 668 62.9
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 3.7e-208 728.8 647 61.4
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.4e-207 726.9 661 60.5
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.4e-207 726.9 653 61.7
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.9e-207 726.5 649 61.2
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.5e-206 722.2 687 60.4
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.8e-206 721.1 690 60.1
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.3e-205 720.3 686 60.5
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.1e-205 718.4 687 60.3
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.9e-204 716.5 571 64.6
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 2.5e-204 716.1 657 60.1
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.5e-204 716.1 661 60.1
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.6e-203 713.4 651 60.5
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 2.8e-203 712.6 664 61.1
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 4.7e-203 711.8 651 60.5
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 8.1e-203 711.1 655 61.7
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 8.1e-203 711.1 655 61.7
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.8e-202 709.9 660 63.5
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 4.0e-202 708.8 651 60.4
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 4.0e-202 708.8 666 59.3
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.1e-199 700.7 655 60.5
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 3.2e-199 699.1 657 59.8
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.2e-199 699.1 654 59.2
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 4.1e-199 698.7 614 62.2
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.2e-198 697.2 639 61.5
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 2.1e-198 696.4 648 62.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 6.0e-198 694.9 647 59.7
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.7e-197 693.3 654 58.6
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.3e-196 688.7 655 58.5
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 5.6e-196 688.3 661 58.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 3.6e-195 685.6 674 57.1
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 4.0e-194 682.2 669 60.2
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.7e-192 676.8 642 59.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 7.1e-191 671.4 647 59.7
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 9.2e-191 671.0 617 63.4
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.5e-190 669.1 663 58.4
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 3.3e-188 662.5 641 58.7
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 7.3e-188 661.4 554 63.4
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.2e-182 644.0 682 56.2
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.1e-180 637.5 619 61.6
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.3e-179 634.0 610 62.5
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 3.6e-179 632.5 626 57.7
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.4e-177 625.9 511 64.4
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 4.5e-177 625.5 662 55.6
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 7.1e-175 618.2 659 56.4
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.0e-173 614.4 658 55.2
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.3e-173 614.0 665 55.0
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 7.4e-172 608.2 667 56.5
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 4.8e-171 605.5 657 53.9
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 3.2e-167 592.8 645 53.6
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 2.5e-156 556.6 671 48.6
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.6e-150 535.8 439 67.9
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.2e-137 494.6 537 53.1
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 6.1e-134 482.3 624 46.0
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 6.1e-134 482.3 577 45.8
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 8.0e-126 455.3 648 42.1
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 3.8e-120 436.4 342 67.5
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.1e-119 434.9 601 44.4
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 5.2e-109 399.4 429 57.6
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 3.5e-105 386.7 674 41.1
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 4.4e-100 369.8 643 36.7
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.6e-94 350.1 353 56.1
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.3e-93 347.4 544 43.8
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.1e-87 328.6 425 48.2
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.5e-87 327.4 318 55.3
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.5e-87 325.5 296 59.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.3e-80 305.1 311 57.2
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 3.2e-74 283.9 312 50.0
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 2.7e-65 254.2 642 29.3
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.3e-62 245.4 687 27.9
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.3e-51 208.8 207 60.4
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.9e-50 204.9 149 66.4
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.0e-48 199.1 259 47.1
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.5e-47 195.3 253 47.4
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 2.2e-43 181.4 615 26.2
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 9.7e-39 166.0 253 42.7
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.6e-38 165.2 253 42.7
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.2e-33 149.1 177 49.7
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 3.6e-33 147.5 115 65.2
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.8e-30 137.9 98 67.3
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 4.8e-30 137.1 138 50.0
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.4e-29 135.6 99 67.7
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 4.1e-29 134.0 146 55.5
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.5e-28 132.1 158 47.5
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.6e-25 122.1 188 41.5
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.7e-22 112.1 167 50.3
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 2.0e-20 105.1 99 55.6
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.0e-16 92.8 410 24.9
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 4.0e-16 90.9 81 60.5
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.1e-15 89.4 122 44.3
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 2.6e-15 88.2 77 64.9
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-14 85.9 152 40.8
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 1.2e-12 79.3 142 37.3
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 1.2e-12 79.3 142 37.3
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.2e-12 79.3 142 37.3
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 2.7e-12 78.2 142 36.6
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.7e-12 78.2 142 36.6
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 3.5e-12 77.8 142 36.6
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 4.5e-12 77.4 104 49.0
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.0e-11 76.3 120 41.7
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 5.5e-10 70.5 108 43.5
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 3.0e-08 64.7 54 50.0
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 3.0e-08 64.7 54 50.0
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 8.8e-08 63.2 45 57.8


User provided reference genes

Program Settings