Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.9e-136 489.2 245 100.0
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 6.9e-123 444.1 286 81.1
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.8e-110 402.9 241 80.9
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 3.1e-107 392.1 241 77.6
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 3.8e-105 385.2 235 79.1
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 4.9e-105 384.8 237 76.8
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 8.4e-105 384.0 241 78.8
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.2e-104 382.1 237 76.4
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 4.2e-104 381.7 241 76.8
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 1.2e-103 380.2 241 77.2
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 1.2e-103 380.2 241 75.5
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 1.2e-103 380.2 241 76.8
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 1.6e-103 379.8 241 76.3
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.1e-103 379.4 241 78.0
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 4.6e-103 378.3 241 76.3
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 4.6e-103 378.3 241 77.6
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 4.6e-103 378.3 241 76.3
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 6.0e-103 377.9 241 73.4
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 1.0e-102 377.1 241 74.7
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 1.8e-102 376.3 241 75.1
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 1.8e-102 376.3 241 75.1
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.8e-102 376.3 238 75.6
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 3.0e-102 375.6 241 76.3
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 3.9e-102 375.2 241 77.2
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 6.7e-102 374.4 241 76.3
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 6.7e-102 374.4 253 73.1
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 8.7e-102 374.0 242 74.4
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 1.1e-101 373.6 239 76.2
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.5e-101 373.2 241 76.3
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 1.5e-101 373.2 241 76.8
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 1.5e-101 373.2 241 76.8
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 1.9e-101 372.9 235 77.9
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 1.9e-101 372.9 235 77.9
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 2.5e-101 372.5 241 75.1
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 3.3e-101 372.1 241 73.9
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 3.3e-101 372.1 241 74.7
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 4.3e-101 371.7 241 75.5
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 4.3e-101 371.7 241 75.9
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 5.7e-101 371.3 241 76.8
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 7.4e-101 370.9 241 74.7
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 1.6e-100 369.8 238 73.1
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 1.6e-100 369.8 241 74.7
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 6.3e-100 367.9 237 73.8
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 8.2e-100 367.5 237 73.8
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 1.1e-99 367.1 237 74.7
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 1.1e-99 367.1 248 72.6
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 1.4e-99 366.7 222 80.6
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 1.8e-99 366.3 241 74.3
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 3.1e-99 365.5 230 77.4
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 3.1e-99 365.5 241 73.0
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 5.3e-99 364.8 241 73.4
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 9.0e-99 364.0 242 74.8
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 2.0e-98 362.8 241 71.4
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 2.0e-98 362.8 241 72.6
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 3.4e-98 362.1 241 71.8
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 3.4e-98 362.1 232 74.6
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 5.9e-98 361.3 237 73.8
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 7.6e-98 360.9 234 73.9
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.0e-97 360.5 241 73.0
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.0e-97 360.5 241 73.0
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.0e-97 360.5 241 73.0
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 1.3e-97 360.1 227 76.2
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 3.8e-97 358.6 234 73.1
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 3.8e-97 358.6 264 68.9
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 2.5e-96 355.9 234 72.6
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 1.6e-95 353.2 263 67.3
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.0e-94 350.5 236 73.7
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 5.1e-94 348.2 231 73.2
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 5.1e-94 348.2 234 72.6
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.5e-93 346.7 239 70.7
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.5e-93 345.9 264 65.2
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 4.3e-93 345.1 230 73.5
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 4.3e-93 345.1 230 73.5
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 9.7e-93 344.0 234 71.8
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 2.2e-92 342.8 243 69.5
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 6.9e-91 337.8 243 67.1
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 4.5e-90 335.1 233 70.8
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 7.7e-90 334.3 241 68.5
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.0e-89 334.0 233 70.8
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.0e-89 334.0 262 64.9
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 1.3e-89 333.6 241 65.1
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.9e-89 332.4 233 70.4
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 3.8e-89 332.0 211 77.7
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 6.5e-89 331.3 233 70.0
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 1.6e-87 326.6 210 76.2
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 1.6e-87 326.6 236 68.6
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.4e-86 323.6 241 67.6
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 6.7e-86 321.2 255 64.7
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.2e-84 316.2 264 62.1
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 2.5e-80 302.8 195 76.4
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 6.7e-78 294.7 192 75.0
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 8.8e-78 294.3 228 63.6
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 1.1e-77 293.9 236 61.4
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 2.6e-77 292.7 212 68.4
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 4.4e-77 292.0 243 63.4
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 8.2e-76 287.7 233 63.5
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 2.0e-74 283.1 195 72.3
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.2e-73 279.6 277 55.6
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.2e-69 267.3 307 49.2
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 2.6e-69 266.2 241 54.8
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.3e-69 265.8 196 68.9
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 8.5e-65 251.1 226 55.3
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 1.9e-64 250.0 160 74.4
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 9.8e-61 237.7 226 52.2
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.4e-59 233.0 230 53.5
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.6e-58 230.3 160 69.4
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 8.6e-57 224.6 196 61.2
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 3.2e-56 222.6 173 64.2
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 3.2e-56 222.6 173 64.2
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 9.5e-56 221.1 222 50.9
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 3.0e-54 216.1 157 66.9
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 6.8e-46 188.3 122 72.1
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 1.4e-38 164.1 124 64.5
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 8.9e-38 161.4 165 53.9
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 2.7e-34 149.8 121 62.0
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 6.6e-33 145.2 93 75.3
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 1.1e-24 117.9 92 63.0
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.8e-22 110.5 84 61.9
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 4.0e-22 109.4 72 70.8
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 1.3e-20 104.4 63 73.0
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 2.9e-20 103.2 55 81.8
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 5.6e-16 89.0 105 53.3
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 4.0e-14 82.8 69 60.9
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 1.1e-11 74.7 152 31.6
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 1.1e-08 64.7 72 51.4


User provided reference genes

Program Settings