Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G154550 Populus trichocarpa HOM05D003633 ORTHO05D004245 9.3e-30 132.9 67 100.0
Potri.009G155200 Populus trichocarpa HOM05D003633 ORTHO05D004245 6.4e-23 110.2 57 96.5
Ciclev10027700m.g Citrus clementina HOM05D003633 ORTHO05D004245 1.1e-22 109.4 61 90.2
Sabra09G0121700 Salix brachista HOM05D003633 ORTHO05D004245 1.1e-22 109.4 57 96.5
MELO3C014687.2 Cucumis melo HOM05D003633 ORTHO05D004245 1.4e-22 109.0 57 94.7
CsaV3_4G023280 Cucumis sativus L. HOM05D003633 ORTHO05D004245 1.4e-22 109.0 57 94.7
Duzib170G1043 Durio zibethinus HOM05D003633 ORTHO05D004245 1.9e-22 108.6 57 94.7
Gohir.A05G076900 Gossypium hirsutum HOM05D003633 ORTHO05D004245 1.9e-22 108.6 61 90.2
Gohir.D05G079700 Gossypium hirsutum HOM05D003633 ORTHO05D004245 1.9e-22 108.6 61 90.2
Gorai.009G081300 Gossypium raimondii HOM05D003633 ORTHO05D004245 1.9e-22 108.6 61 90.2
Thecc.09G266900 Theobroma cacao HOM05D003633 ORTHO05D004245 1.9e-22 108.6 57 94.7
Glyma.14G044900 Glycine max HOM05D003633 ORTHO05D004245 2.4e-22 108.2 62 87.1
GSVIVG01033181001 Vitis vinifera HOM05D003633 ORTHO05D004245 2.4e-22 108.2 57 94.7
Glyma.02G271900 Glycine max HOM05D003633 ORTHO05D004245 3.2e-22 107.8 61 88.5
Manes.06G005500 Manihot esculenta HOM05D003633 ORTHO05D004245 3.2e-22 107.8 61 90.2
Phvul.009G196800 Phaseolus vulgaris HOM05D003633 ORTHO05D004245 3.2e-22 107.8 61 88.5
Sed0007253 Sechium edule HOM05D003633 ORTHO05D004245 3.2e-22 107.8 57 93.0
ClCG02G024050 Citrullus lanatus HOM05D003633 ORTHO05D004245 5.4e-22 107.1 57 93.0
Atru.chr3.3038 Acer truncatum HOM05D003633 ORTHO05D004245 7.1e-22 106.7 61 86.9
Nn2g11908 Nelumbo nucifera HOM05D003633 ORTHO05D004245 7.1e-22 106.7 57 93.0
CSS0028100 Camellia sinensis var. sinensis HOM05D003633 ORTHO05D004245 9.3e-22 106.3 61 86.9
Dinv32833 Davidia involucrata HOM05D003633 ORTHO05D004245 9.3e-22 106.3 61 88.5
THA.LOC104800499 Tarenaya hassleriana HOM05D003633 ORTHO05D004245 9.3e-22 106.3 57 93.0
HPP92_021530 Vanilla planifolia HOM05D003633 ORTHO05D004245 9.3e-22 106.3 61 86.9
CiPaw.13G125200 Carya illinoinensis HOM05D003633 ORTHO05D004245 1.2e-21 105.9 57 93.0
TWI75G0107 Tripterygium wilfordii HOM05D003633 ORTHO05D004245 1.2e-21 105.9 61 86.9
TAR636G3505 Trochodendron aralioides HOM05D003633 ORTHO05D004245 1.6e-21 105.5 57 93.0
MBI05_g07506_MAGBIO Magnolia biondii HOM05D003633 ORTHO05D004245 2.1e-21 105.1 57 91.2
Prupe.6G149900 Prunus persica HOM05D003633 ORTHO05D004245 2.1e-21 105.1 61 86.9
Actinidia06352 Actinidia chinensis HOM05D003633 ORTHO05D004245 2.7e-21 104.8 57 89.5
Actinidia22465 Actinidia chinensis HOM05D003633 ORTHO05D004245 2.7e-21 104.8 57 89.5
MD11G1177700 Malus domestica HOM05D003633 ORTHO05D004245 2.7e-21 104.8 63 82.5
Cc01_g08350 Coffea canephora HOM05D003633 ORTHO05D004245 4.6e-21 104.0 61 82.0
PGR119G0283 Punica granatum HOM05D003633 ORTHO05D004245 6.0e-21 103.6 61 83.6
ECA238G1454 Erigeron canadensis HOM05D003633 ORTHO05D004245 1.0e-20 102.8 61 83.6
LjContig00564g0017285 Lotus japonicus HOM05D003633 ORTHO05D004245 1.8e-20 102.1 61 85.2
Eucgr.J00601 Eucalyptus grandis HOM05D003633 ORTHO05D004245 2.3e-20 101.7 61 82.0
CDE06G2316 Ceratophyllum demersum HOM05D003633 ORTHO05D004245 3.0e-20 101.3 57 86.0
MD03G1161700 Malus domestica HOM05D003633 ORTHO05D004245 3.0e-20 101.3 61 82.0
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 3.9e-20 100.9 57 86.0
Os02g0133300 Oryza sativa ssp. japonica HOM05D003633 ORTHO05D004245 3.9e-20 100.9 62 80.6
vmacro21588 Vaccinium macrocarpon HOM05D003633 ORTHO05D004245 3.9e-20 100.9 57 86.0
HanXRQChr06g0181531 Helianthus annuus HOM05D003633 ORTHO05D004245 5.1e-20 100.5 61 80.3
Lalb_Chr04g0249821 Lupinus albus HOM05D003633 ORTHO05D004245 5.1e-20 100.5 61 83.6
Aqoxy7G01992 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 8.7e-20 99.8 57 87.7
Rhsim01G0197900 Rhododendron simsii HOM05D003633 ORTHO05D004245 8.7e-20 99.8 57 86.0
SalBow3G2138 Salvia bowleyana HOM05D003633 ORTHO05D004245 8.7e-20 99.8 57 86.0
Medtr1g051825 Medicago truncatula HOM05D003633 ORTHO05D004245 1.1e-19 99.4 61 80.3
AUR62001588 Chenopodium quinoa HOM05D003633 ORTHO05D004245 1.5e-19 99.0 61 82.0
SGA_v2.0_scaffold79G25491 Striga asiatica HOM05D003633 ORTHO05D004245 1.5e-19 99.0 57 86.0
AUR62020192 Chenopodium quinoa HOM05D003633 ORTHO05D004245 2.5e-19 98.2 61 80.3
Aa31LG5G8590 Aethionema arabicum HOM05D003633 ORTHO05D004245 3.3e-19 97.8 57 84.2
Migut.N02425 Erythranthe guttata HOM05D003633 ORTHO05D004245 4.3e-19 97.4 57 84.2
Cpa.g.sc103.58 Carica papaya HOM05D003633 ORTHO05D004245 5.6e-19 97.1 57 86.0
PSO017G3356 Papaver somniferum HOM05D003633 ORTHO05D004245 7.4e-19 96.7 61 80.3
PSO170G6842 Papaver somniferum HOM05D003633 ORTHO05D004245 7.4e-19 96.7 61 80.3
Nitab4.5_0003359g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 9.6e-19 96.3 57 80.7
Zm00001eb297550 Zea mays HOM05D003633 ORTHO05D004245 9.6e-19 96.3 62 75.8
Lj2A874G36 Lonicera japonica HOM05D003633 ORTHO05D004245 1.3e-18 95.9 57 80.7
CANSAT54G1723 Cannabis sativa HOM05D003633 ORTHO05D004245 1.6e-18 95.5 57 82.5
Migut.N02426 Erythranthe guttata HOM05D003633 ORTHO05D004245 2.1e-18 95.1 57 82.5
Sc12g0000470 Simmondsia chinensis HOM05D003633 ORTHO05D004245 2.1e-18 95.1 61 78.7
unitig_27.g25129 Utricularia gibba HOM05D003633 ORTHO05D004245 3.6e-18 94.4 57 82.5
Lsat_1_v5_gn_6_106240 Lactuca sativa HOM05D003633 ORTHO05D004245 4.8e-18 94.0 61 77.0
EL10Ac7g16251 Beta vulgaris HOM05D003633 ORTHO05D004245 8.1e-18 93.2 61 78.7
ATR0618G336 Amborella trichopoda HOM05D003633 ORTHO05D004245 2.4e-17 91.7 57 78.9
LjContig00564g0013149 Lotus japonicus HOM05D003633 ORTHO05D004245 2.4e-17 91.7 56 80.4
Peaxi162Scf00355g00113 Petunia axillaris HOM05D003633 ORTHO05D004245 2.4e-17 91.7 57 77.2
Hund18817 Selenicereus undatus HOM05D003633 ORTHO05D004245 2.4e-17 91.7 56 80.4
Solyc06g073780.4 Solanum lycopersicum HOM05D003633 ORTHO05D004245 2.4e-17 91.7 59 76.3
COL.COLO4_25352 Corchorus olitorius HOM05D003633 ORTHO05D004245 3.1e-17 91.3 57 77.2
CARHR119550 Cardamine hirsuta HOM05D003633 ORTHO05D004245 5.3e-17 90.5 57 82.5
FAN04G2246 Fragaria x ananassa HOM05D003633 ORTHO05D004245 5.3e-17 90.5 62 72.6
RcHm_v2.0_Chr7g0186721 Rosa chinensis HOM05D003633 ORTHO05D004245 5.3e-17 90.5 62 72.6
AagrBONN_evm.TU.Sc2ySwM_228.640 Anthoceros agrestis HOM05D003633 ORTHO05D004245 9.0e-17 89.7 57 77.2
Sopen06g030170 Solanum pennellii HOM05D003633 ORTHO05D004245 9.0e-17 89.7 57 77.2
PGSC0003DMG400005912 Solanum tuberosum HOM05D003633 ORTHO05D004245 9.0e-17 89.7 57 77.2
FAN18G2517 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.2e-16 89.4 57 77.2
FAN18G4241 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.2e-16 89.4 57 77.2
Carub.0004s0770 Capsella rubella HOM05D003633 ORTHO05D004245 3.4e-16 87.8 57 77.2
RcHm_v2.0_Chr1g0362081 Rosa chinensis HOM05D003633 ORTHO05D004245 3.4e-16 87.8 57 75.4
Pp3c24_13420 Physcomitrium patens HOM05D003633 ORTHO05D004245 4.5e-16 87.4 57 75.4
AT2G27170 Arabidopsis thaliana HOM05D003633 ORTHO05D004245 5.8e-16 87.0 57 77.2
Mapoly0048s0100 Marchantia polymorpha HOM05D003633 ORTHO05D004245 5.8e-16 87.0 57 75.4
Oeu058179.1 Olea europaea HOM05D003633 ORTHO05D004245 7.6e-16 86.7 57 75.4
AL4G20920 Arabidopsis lyrata HOM05D003633 ORTHO05D004245 1.3e-15 85.9 57 75.4
Thhalv10001887m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 1.7e-15 85.5 58 79.3
BcaC02g08276 Brassica carinata HOM05D003633 ORTHO05D004245 2.4e-14 81.6 58 75.9
A04p20650 Brassica napus HOM05D003633 ORTHO05D004245 2.4e-14 81.6 58 75.9
C04p56430 Brassica napus HOM05D003633 ORTHO05D004245 2.4e-14 81.6 58 75.9
BolC4t27174H Brassica oleracea HOM05D003633 ORTHO05D004245 2.4e-14 81.6 58 75.9
BraA04t17638Z Brassica rapa HOM05D003633 ORTHO05D004245 2.4e-14 81.6 58 75.9
TPR.G1293 Trifolium pratense HOM05D003633 ORTHO05D004245 2.4e-14 81.6 57 70.2
Sp4g09970 Schrenkiella parvula HOM05D003633 ORTHO05D004245 3.2e-14 81.3 58 75.9
HPP92_021489 Vanilla planifolia HOM05D003633 ORTHO05D004245 4.2e-14 80.9 50 82.0
BcaB06g28118 Brassica carinata HOM05D003633 ORTHO05D004245 7.1e-14 80.1 58 74.1
arahy.Tifrunner.gnm1.ann1.10ENSP Arachis hypogaea HOM05D003633 ORTHO05D004245 1.2e-13 79.3 49 81.6
arahy.Tifrunner.gnm1.ann1.HKS14U Arachis hypogaea HOM05D003633 ORTHO05D004245 1.2e-13 79.3 49 81.6
CBR_g39806 Chara braunii HOM05D003633 ORTHO05D004245 2.1e-13 78.6 56 67.9
Lj2C854G3 Lonicera japonica HOM05D003633 ORTHO05D004245 6.0e-13 77.0 48 77.1
BcaC01g04925 Brassica carinata HOM05D003633 ORTHO05D004245 1.8e-12 75.5 58 69.0
A03p26730 Brassica napus HOM05D003633 ORTHO05D004245 1.8e-12 75.5 58 70.7
C03p32030 Brassica napus HOM05D003633 ORTHO05D004245 2.3e-12 75.1 58 67.2
BolC3t15547H Brassica oleracea HOM05D003633 ORTHO05D004245 2.3e-12 75.1 58 69.0
BraA03t11884Z Brassica rapa HOM05D003633 ORTHO05D004245 5.1e-12 73.9 58 69.0
Thhalv10023124m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 8.7e-12 73.2 48 72.9
Lj2C868T4 Lonicera japonica HOM05D003633 ORTHO05D004245 1.5e-11 72.4 56 62.5
BcaB01g03052 Brassica carinata HOM05D003633 ORTHO05D004245 1.9e-11 72.0 57 64.9
Lj2C849G3 Lonicera japonica HOM05D003633 ORTHO05D004245 1.9e-11 72.0 56 62.5
Lj2C853G1 Lonicera japonica HOM05D003633 ORTHO05D004245 1.9e-11 72.0 56 62.5
Lsat_1_v5_gn_2_27520 Lactuca sativa HOM05D003633 ORTHO05D004245 2.5e-11 71.6 39 89.7
VMungo1309G0828 Vigna mungo HOM05D003633 ORTHO05D004245 2.5e-11 71.6 38 92.1
arahy.Tifrunner.gnm1.ann1.65YTHF Arachis hypogaea HOM05D003633 ORTHO05D004245 5.6e-11 70.5 55 67.3
Lj2C873T5 Lonicera japonica HOM05D003633 ORTHO05D004245 7.4e-11 70.1 56 60.7
Nitab4.5_0000200g0070 Nicotiana tabacum HOM05D003633 ORTHO05D004245 1.6e-10 68.9 46 73.9
arahy.Tifrunner.gnm1.ann1.Z8K404 Arachis hypogaea HOM05D003633 ORTHO05D004245 1.1e-09 66.2 45 73.3
Pp3c8_19660 Physcomitrium patens HOM05D003633 ORTHO05D004245 2.4e-09 65.1 49 63.3
arahy.Tifrunner.gnm1.ann1.KL7BWI Arachis hypogaea HOM05D003633 ORTHO05D004245 3.1e-09 64.7 39 82.1
Lj2A851G15 Lonicera japonica HOM05D003633 ORTHO05D004245 5.3e-09 63.9 56 58.9
PRCOL_00007015 Prasinoderma coloniale HOM05D003633 ORTHO05D004245 9.0e-09 63.2 62 50.0
Cre10.g445650 Chlamydomonas reinhardtii HOM05D003633 ORTHO05D004245 4.9e-07 57.4 62 48.4
Peaxi162Scf00046g00529 Petunia axillaris HOM05D003633 ORTHO05D004245 4.2e-06 54.3 36 72.2
Cfa023768 Carpinus fangiana HOM05D003633 ORTHO05D004245 9.3e-06 53.1 43 58.1
MCO04G096 Micromonas commoda HOM05D003633 ORTHO05D004245 9.3e-06 53.1 53 52.8


User provided reference genes

Program Settings