Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 3815.4 1972 100.0
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 3494.5 2076 88.6
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2717.6 1975 70.2
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2516.1 1984 65.7
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2497.6 1981 66.1
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2489.9 1981 65.3
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2475.3 2060 63.4
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2462.2 1967 65.2
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2427.5 1968 64.3
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2406.7 1979 63.8
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2400.9 1976 64.7
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2398.2 1986 63.5
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2387.1 1985 63.4
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2367.0 1967 63.2
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2357.4 1983 62.5
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2350.5 1984 61.9
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2330.8 2009 61.7
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2323.5 1980 62.5
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2286.9 1992 61.1
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2283.4 1975 61.2
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2276.5 1977 61.2
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2275.0 1978 60.9
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2248.8 2004 59.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2214.9 1786 64.3
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2202.6 1986 59.0
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2199.9 2187 55.5
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2194.9 1977 58.6
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 2184.8 1981 57.8
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2149.0 1974 57.1
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2147.9 1985 57.7
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2140.2 2006 57.4
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 2131.3 1972 56.8
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2118.2 1974 56.6
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2104.7 2064 54.7
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2087.8 1983 56.7
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2085.1 1980 56.4
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 2065.0 1972 55.8
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 2057.3 1977 55.2
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2056.2 2072 53.6
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 2053.5 1978 55.3
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 2053.5 1981 55.9
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 2050.0 1983 55.4
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 2046.2 2033 54.2
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 2046.2 1974 55.5
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 2043.9 1970 54.9
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2040.4 1980 55.5
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2040.4 1993 55.8
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2039.2 1993 55.7
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 2032.7 1976 55.5
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2025.0 1978 54.9
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 2016.5 1981 54.6
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 2015.4 1984 54.5
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 2007.3 1982 54.4
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 2006.9 1979 54.5
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1983.0 1976 53.7
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1968.4 1979 53.1
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1946.4 2004 53.2
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1944.1 1986 53.8
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1941.8 1974 53.3
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1926.4 2016 52.8
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1915.2 2029 52.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1907.9 2096 50.9
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1889.4 1973 52.6
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1887.5 1943 52.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1879.4 1970 53.1
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1873.2 1983 51.7
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1869.4 2174 48.2
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1858.2 2021 51.1
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1853.2 1740 57.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1831.2 1971 51.4
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1826.2 1976 50.5
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1808.1 1832 52.7
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1795.8 1992 51.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1788.1 1976 51.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1595.9 1998 45.8
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1594.3 1389 60.8
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1566.2 1500 56.9
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1555.8 1971 46.2
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1460.7 1386 57.9
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1432.5 1262 60.5
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1431.8 1394 55.7
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1314.3 2324 38.5
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1176.4 2016 38.0
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1083.2 1235 48.8
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.0e-297 1026.9 1219 47.7
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.6e-294 1017.3 2065 32.4
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 3.3e-284 983.0 2077 32.7
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 8.7e-277 958.4 1087 48.1
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 1.1e-263 914.8 1016 50.5
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 5.0e-256 889.4 2093 30.2
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.4e-255 887.9 780 58.3
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.1e-254 882.5 1075 52.6
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 1.5e-247 861.3 665 67.8
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 9.7e-244 848.6 712 62.8
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 2.1e-238 830.9 587 70.0
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.8e-218 764.6 1332 38.1
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.4e-218 764.2 743 54.9
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.5e-212 745.0 738 53.8
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.9e-199 701.4 1431 32.4
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.9e-187 661.0 852 44.2
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 1.3e-184 652.1 475 70.9
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.9e-175 621.7 731 47.1
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 6.2e-166 590.1 716 45.4
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.4e-165 588.2 517 61.5
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 8.2e-158 563.1 763 43.6
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.9e-146 525.4 2145 24.2
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-142 511.9 602 48.5
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 1.3e-139 502.7 500 53.8
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 4.0e-128 464.5 420 59.5
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 2.8e-126 458.4 336 67.3
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 5.3e-125 454.1 391 60.4
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.0e-112 413.3 815 35.7
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 2.8e-105 388.7 648 38.4
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.3e-99 369.0 639 37.1
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 6.0e-76 291.2 202 68.8
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.3e-75 290.0 215 66.0
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.3e-57 230.3 208 58.7
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.3e-57 230.3 477 30.4
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 2.1e-57 229.6 190 62.6
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.2e-53 215.3 345 41.7
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.7e-52 212.6 135 75.6
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 6.5e-46 191.4 585 29.4
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.5e-45 189.5 358 34.1
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 8.2e-41 174.5 133 66.2
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.7e-38 166.8 100 81.0
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 8.5e-38 164.5 148 54.7
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.9e-34 153.3 125 59.2
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 4.8e-33 148.7 166 46.4
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.5e-31 143.7 127 55.9
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.9e-30 139.4 704 24.3
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.7e-28 132.9 92 66.3
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 3.3e-26 125.9 149 48.3
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.7e-25 123.6 93 65.6
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 3.1e-24 119.4 585 25.6
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 4.1e-24 119.0 96 64.6
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-23 117.5 168 39.3
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.0e-22 114.4 90 64.4
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 3.8e-22 112.5 89 62.9
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 8.5e-22 111.3 174 37.9
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.5e-21 109.8 138 49.3
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 2.1e-20 106.7 123 47.2
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 4.7e-20 105.5 110 50.9
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.4e-16 94.0 125 42.4
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 7.7e-15 88.2 80 53.8
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 7.7e-15 88.2 81 54.3
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 2.9e-14 86.3 51 68.6
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 2.9e-14 86.3 61 68.9
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 5.0e-14 85.5 163 38.0
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.5e-13 84.0 113 45.1
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 1.5e-13 84.0 149 38.3
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 5.5e-13 82.0 52 65.4
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 2.1e-12 80.1 107 48.6
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 3.0e-11 76.3 71 50.7
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.2e-10 74.3 149 32.2
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.4e-10 72.4 187 29.9
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 2.2e-09 70.1 105 37.1
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 4.8e-09 68.9 78 46.2
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 8.2e-09 68.2 66 53.0
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 9.1e-08 64.7 69 47.8
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 9.1e-08 64.7 52 53.8
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 1.3e-06 60.8 95 40.0
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.7e-06 60.5 57 49.1
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 8.5e-06 58.2 74 47.3


User provided reference genes

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