Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.3e-232 807.0 441 100.0
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.9e-208 729.2 441 85.5
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 6.0e-202 707.6 441 84.8
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.2e-189 666.8 457 78.3
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.5e-165 586.6 444 71.6
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.2e-163 577.8 442 70.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.2e-162 577.0 442 70.6
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.2e-162 577.0 442 70.6
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.0e-161 572.4 442 69.9
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.9e-161 572.0 442 70.4
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-160 570.1 442 69.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.3e-160 568.9 448 68.8
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.3e-160 568.5 445 68.8
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.7e-160 568.2 496 63.9
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 9.7e-160 567.4 446 68.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 9.7e-160 567.4 442 69.0
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 3.7e-159 565.5 471 71.1
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 4.8e-159 565.1 442 69.0
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.8e-158 563.1 442 68.6
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.5e-157 560.1 461 66.2
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.7e-156 556.6 446 72.0
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 5.0e-156 555.1 445 67.6
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.4e-155 553.5 442 68.1
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.5e-155 552.7 447 67.6
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 5.5e-155 551.6 441 67.3
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.2e-154 550.4 449 66.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.7e-154 548.5 448 68.5
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 6.1e-154 548.1 445 65.8
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 7.9e-154 547.7 449 66.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 7.9e-154 547.7 444 66.4
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.0e-153 547.4 448 68.3
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.4e-153 547.0 445 65.8
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 2.0e-152 543.1 447 66.7
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.6e-152 542.7 446 64.6
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.4e-152 541.2 432 67.8
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.8e-151 539.3 451 65.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 8.2e-151 537.7 457 66.1
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.4e-150 537.0 450 66.0
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.4e-150 537.0 452 65.0
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.4e-150 537.0 448 67.4
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 9.1e-150 534.3 450 65.8
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 2.6e-149 532.7 455 64.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 5.9e-149 531.6 445 63.4
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 7.7e-149 531.2 446 65.7
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 7.7e-149 531.2 452 64.8
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 7.7e-149 531.2 441 63.7
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.0e-148 530.8 441 63.7
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.0e-148 530.8 441 63.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.3e-148 530.4 441 63.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.3e-148 530.4 444 65.5
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 2.2e-148 529.6 455 63.3
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.2e-148 529.6 452 64.6
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 6.5e-148 528.1 449 64.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.2e-147 525.4 443 66.1
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 7.2e-147 524.6 448 65.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 6.1e-146 521.5 441 65.3
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 8.0e-146 521.2 443 65.5
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.0e-145 520.8 443 65.0
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.0e-145 519.2 459 63.0
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 8.8e-145 517.7 455 64.6
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.5e-144 516.9 448 63.6
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 4.4e-144 515.4 455 62.9
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 5.7e-144 515.0 492 58.9
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 7.4e-144 514.6 452 65.0
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.3e-143 513.8 442 68.3
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.3e-143 511.5 446 64.6
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 6.3e-143 511.5 431 66.8
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.1e-142 510.8 441 66.2
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.4e-142 510.4 451 65.0
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-142 510.4 448 63.8
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.6e-141 506.9 443 66.1
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.6e-141 506.9 434 64.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 7.7e-141 504.6 476 60.1
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 7.7e-141 504.6 444 64.4
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 7.7e-141 504.6 444 64.4
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.0e-140 504.2 441 63.0
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.7e-140 503.4 441 63.3
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 8.5e-140 501.1 440 63.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 8.5e-140 501.1 445 63.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.9e-139 500.0 460 63.0
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 7.2e-139 498.0 443 63.2
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-138 496.9 460 63.0
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 2.1e-138 496.5 499 57.3
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 4.7e-138 495.4 444 62.6
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.4e-137 493.8 445 62.5
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 4.0e-137 492.3 460 62.8
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.2e-136 490.7 460 62.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.5e-136 490.3 444 63.3
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.2e-135 486.5 447 62.0
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.8e-135 486.1 445 62.9
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 5.3e-134 481.9 459 62.1
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.6e-133 480.3 447 65.5
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.5e-133 479.2 441 60.8
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.7e-132 476.9 445 61.3
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 6.3e-127 458.4 434 61.8
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.3e-127 458.0 450 58.2
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.1e-126 457.6 467 57.6
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 5.4e-126 455.3 441 61.5
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.3e-124 450.7 433 58.4
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.8e-122 443.0 449 57.9
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.2e-121 438.7 442 58.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 6.8e-121 438.3 450 57.1
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.6e-120 436.4 433 57.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 7.0e-118 428.3 444 55.9
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 4.5e-117 425.6 380 62.9
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.9e-115 420.2 447 53.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 8.0e-114 414.8 450 56.7
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 3.1e-113 412.9 446 55.8
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.9e-111 406.4 315 70.2
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.7e-111 406.0 377 57.3
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.3e-108 397.5 441 56.0
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 2.3e-108 396.7 480 49.0
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 2.0e-104 383.6 377 58.1
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.3e-100 370.9 441 51.7
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.9e-99 367.1 452 50.7
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 3.4e-96 356.3 313 65.2
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.7e-95 352.8 376 57.2
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.4e-94 350.9 432 52.3
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.9e-91 340.5 316 61.1
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 2.6e-88 330.1 438 47.3
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-86 324.7 322 58.1
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.4e-86 323.6 486 44.7
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 5.1e-84 315.8 508 41.9
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.5e-72 276.2 442 43.4
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 4.9e-71 272.7 442 43.4
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 3.5e-69 266.5 219 65.8
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 6.7e-68 262.3 169 76.3
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.8e-58 230.3 356 44.1
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.9e-55 220.3 137 78.1
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 3.2e-54 216.9 262 51.1
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 3.2e-54 216.9 262 51.1
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 5.5e-54 216.1 344 41.9
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-43 181.8 190 54.2
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.4e-38 164.9 330 39.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.4e-33 148.3 117 64.1
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.0e-33 146.0 83 85.5
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.5e-32 144.8 441 33.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.5e-32 144.8 91 80.2
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 5.0e-31 139.8 74 86.5
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.5e-30 138.3 142 52.8
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-30 138.3 142 52.8
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.5e-30 138.3 185 47.0
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.1e-27 128.6 140 57.9
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.5e-27 128.3 266 37.2
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 3.3e-27 127.1 69 84.1
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-26 125.2 121 57.0
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 8.2e-26 122.5 94 67.0
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 3.1e-25 120.6 68 82.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.4e-17 95.1 520 26.3
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.1e-13 79.7 62 66.1
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 5.7e-11 73.2 95 48.4
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 6.3e-10 69.7 73 53.4
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 1.5e-06 58.5 56 53.6
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 2.5e-06 57.8 129 37.2


User provided reference genes

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