Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 7.5e-39 164.5 175 100.0
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 1.4e-24 117.1 83 77.1
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.2e-17 94.0 87 60.9
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.1e-17 93.2 54 83.3
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 2.1e-17 93.2 53 84.9
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 4.7e-17 92.0 73 69.9
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.1e-16 90.9 82 61.0
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.4e-16 90.5 82 61.0
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 3.1e-16 89.4 82 59.8
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 4.0e-16 89.0 80 63.8
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.6e-15 86.3 82 59.8
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 3.4e-15 85.9 50 82.0
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 2.2e-14 83.2 81 55.6
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 3.7e-14 82.4 82 59.8
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 4.9e-14 82.0 52 75.0
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 6.4e-14 81.6 82 54.9
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 8.4e-14 81.3 50 76.0
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.1e-13 80.9 75 60.0
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 1.1e-13 80.9 55 70.9
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.4e-13 80.5 75 60.0
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 1.4e-13 80.5 56 73.2
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.9e-13 80.1 83 54.2
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.9e-13 80.1 80 56.2
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 2.4e-13 79.7 55 67.3
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 5.4e-13 78.6 55 72.7
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 5.4e-13 78.6 44 86.4
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 9.2e-13 77.8 55 72.7
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 9.2e-13 77.8 55 70.9
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 9.2e-13 77.8 50 76.0
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.2e-12 77.4 51 74.5
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.6e-12 77.0 72 58.3
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.6e-12 77.0 51 74.5
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 2.7e-12 76.3 52 76.9
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.7e-12 76.3 50 76.0
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 2.7e-12 76.3 80 50.0
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 2.7e-12 76.3 55 63.6
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.7e-12 76.3 55 69.1
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 2.7e-12 76.3 55 69.1
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 3.5e-12 75.9 55 69.1
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.5e-12 75.9 61 67.2
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 4.6e-12 75.5 55 65.5
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 4.6e-12 75.5 50 76.0
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 4.6e-12 75.5 70 58.6
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 4.6e-12 75.5 76 56.6
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 4.6e-12 75.5 80 53.8
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 6.0e-12 75.1 42 83.3
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 6.0e-12 75.1 71 53.5
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 6.0e-12 75.1 55 63.6
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 6.0e-12 75.1 55 67.3
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.8e-12 74.7 55 70.9
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.8e-12 74.7 55 70.9
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 7.8e-12 74.7 76 50.0
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 1.3e-11 73.9 48 72.9
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 1.3e-11 73.9 80 50.0
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.7e-11 73.6 82 54.9
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 1.7e-11 73.6 50 74.0
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 1.7e-11 73.6 50 74.0
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 1.7e-11 73.6 81 55.6
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.7e-11 73.6 50 68.0
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.3e-11 73.2 55 61.8
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 3.9e-11 72.4 55 56.4
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 3.9e-11 72.4 82 52.4
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 5.1e-11 72.0 55 61.8
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 5.1e-11 72.0 52 67.3
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 5.1e-11 72.0 53 64.2
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 5.1e-11 72.0 55 65.5
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 6.6e-11 71.6 50 70.0
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 6.6e-11 71.6 55 65.5
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.1e-10 70.9 49 67.3
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 1.1e-10 70.9 45 73.3
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.1e-10 70.9 52 63.5
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.1e-10 70.9 46 69.6
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.1e-10 70.9 52 71.2
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.1e-10 70.9 50 62.0
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.5e-10 70.5 89 49.4
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 1.5e-10 70.5 81 50.6
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 1.5e-10 70.5 81 50.6
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 1.5e-10 70.5 81 50.6
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 1.5e-10 70.5 81 50.6
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 1.9e-10 70.1 52 67.3
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 2.5e-10 69.7 84 53.6
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 3.3e-10 69.3 54 61.1
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 5.6e-10 68.6 51 64.7
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 5.6e-10 68.6 55 69.1
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 5.6e-10 68.6 44 70.5
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 5.6e-10 68.6 76 52.6
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 5.6e-10 68.6 50 68.0
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 9.6e-10 67.8 50 64.0
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 1.2e-09 67.4 50 64.0
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 1.2e-09 67.4 47 74.5
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 1.2e-09 67.4 55 54.5
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 1.6e-09 67.0 50 66.0
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 1.6e-09 67.0 50 66.0
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.6e-09 67.0 57 64.9
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 2.8e-09 66.2 50 64.0
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 2.8e-09 66.2 50 64.0
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 3.6e-09 65.9 55 60.0
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 3.6e-09 65.9 74 51.4
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 3.6e-09 65.9 80 51.2
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 4.7e-09 65.5 82 45.1
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.7e-09 65.5 32 90.6
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 4.7e-09 65.5 43 69.8
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 4.7e-09 65.5 79 48.1
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 4.7e-09 65.5 84 48.8
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 6.2e-09 65.1 49 59.2
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 8.1e-09 64.7 82 50.0
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 1.1e-08 64.3 49 57.1
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 1.1e-08 64.3 54 53.7
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 1.4e-08 63.9 40 72.5
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.4e-08 63.9 38 78.9
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.8e-08 63.5 52 65.4
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.8e-08 63.5 52 65.4
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 1.8e-08 63.5 49 67.3
MELO3C012432.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.4e-08 63.2 54 61.1
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 2.4e-08 63.2 46 63.0
Cpa.g.sc216.12 Carica papaya HOM05D004188 ORTHO05D004445 3.1e-08 62.8 35 77.1
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 3.1e-08 62.8 50 62.0
PSO339G1636 Papaver somniferum HOM05D004188 ORTHO05D004445 4.0e-08 62.4 40 70.0
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 4.0e-08 62.4 45 64.4
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 5.2e-08 62.0 50 62.0
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 6.8e-08 61.6 41 75.6
C04p22940 Brassica napus HOM05D011190 ORTHO05D013686 6.8e-08 61.6 55 52.7
BolC4t23788H Brassica oleracea HOM05D011190 ORTHO05D013686 6.8e-08 61.6 55 52.7
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 6.8e-08 61.6 43 62.8
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 8.9e-08 61.2 66 54.5
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 1.2e-07 60.8 41 75.6
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.2e-07 60.8 41 65.9
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.5e-07 60.5 50 60.0
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 1.5e-07 60.5 83 47.0
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.5e-07 60.5 50 54.0
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 1.5e-07 60.5 46 56.5
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 2.6e-07 59.7 43 58.1
Carub.0008s2131 Capsella rubella HOM05D004188 ORTHO05D004445 2.6e-07 59.7 78 44.9
DCAR_006440 Daucus carota HOM05D004188 ORTHO05D004445 2.6e-07 59.7 44 61.4
Thecc.09G340200 Theobroma cacao HOM05D004188 ORTHO05D004445 2.6e-07 59.7 32 87.5
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 3.4e-07 59.3 48 58.3
BcaNung07071 Brassica carinata HOM05D011190 ORTHO05D013686 4.4e-07 58.9 54 50.0
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 4.4e-07 58.9 41 63.4
AL8G37220 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 5.8e-07 58.5 40 70.0
DCAR_006441 Daucus carota HOM05D004188 ORTHO05D004445 5.8e-07 58.5 42 64.3
Sp6g22190 Schrenkiella parvula HOM05D004188 ORTHO05D004445 5.8e-07 58.5 42 69.0
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 7.6e-07 58.2 55 58.2
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 7.6e-07 58.2 85 45.9
Ah.01g002880 Amaranthus hybridus HOM05D004188 ORTHO05D004445 9.9e-07 57.8 51 54.9
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 9.9e-07 57.8 49 57.1
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 1.3e-06 57.4 41 70.7
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 1.3e-06 57.4 76 50.0
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 1.3e-06 57.4 41 70.7
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.3e-06 57.4 39 69.2
Os03g0852400 Oryza sativa ssp. japonica HOM05D004188 ORTHO05D004445 1.7e-06 57.0 56 55.4
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 2.2e-06 56.6 76 47.4
Migut.N02602 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.2e-06 56.6 52 57.7
Nn2g13093 Nelumbo nucifera HOM05D004188 ORTHO05D004445 2.2e-06 56.6 33 78.8
Psat5g183560 Pisum sativum HOM05D004188 ORTHO05D004445 2.2e-06 56.6 49 55.1
BraA07t29606Z Brassica rapa HOM05D011190 ORTHO05D013686 3.8e-06 55.8 53 52.8
C09p53350 Brassica napus HOM05D004188 ORTHO05D004445 4.9e-06 55.5 49 63.3
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 4.9e-06 55.5 76 50.0
ECA238G3112 Erigeron canadensis HOM05D004188 ORTHO05D004445 6.4e-06 55.1 49 55.1
Medtr3g049390 Medicago truncatula HOM05D004188 ORTHO05D004445 6.4e-06 55.1 50 54.0


User provided reference genes

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