Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 0.0e+00 1228.0 657 100.0
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 4.0e-311 1070.8 656 87.5
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 4.0e-295 1017.7 691 80.8
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.3e-240 836.6 659 70.7
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.7e-240 836.3 662 69.9
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.4e-239 833.2 665 69.9
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.1e-239 832.0 661 69.4
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 4.0e-234 815.1 661 69.4
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 5.7e-233 811.2 660 68.6
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 8.3e-232 807.4 655 68.2
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.4e-231 806.6 656 68.8
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 2.4e-231 805.8 655 68.4
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.1e-228 797.0 665 66.9
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.5e-228 795.8 656 66.8
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 9.5e-228 793.9 688 65.4
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.2e-227 793.5 659 67.4
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.1e-227 792.7 665 67.2
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 2.8e-227 792.3 689 65.5
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 6.1e-227 791.2 689 65.5
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 5.2e-226 788.1 648 67.9
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 4.9e-224 781.6 662 66.5
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 6.4e-224 781.2 647 65.7
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.4e-223 780.0 660 65.2
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.8e-223 779.6 648 65.9
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.2e-223 778.9 668 65.6
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 7.0e-223 777.7 661 66.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.0e-221 773.9 656 64.2
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.3e-221 773.5 654 65.7
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 3.9e-221 771.9 656 64.2
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.4e-218 763.5 654 63.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.8e-218 763.1 655 63.5
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 8.9e-218 760.8 656 64.0
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 2.6e-217 759.2 646 65.0
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 2.6e-217 759.2 661 63.2
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 8.3e-216 754.2 661 63.7
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 8.3e-216 754.2 666 63.1
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 3.2e-215 752.3 669 62.8
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 5.4e-215 751.5 665 65.0
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.6e-214 750.0 665 62.1
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 4.6e-214 748.4 665 64.7
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 4.6e-214 748.4 667 62.2
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.0e-213 747.3 661 63.8
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 6.6e-213 744.6 632 63.0
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 8.6e-213 744.2 662 62.2
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.2e-211 740.3 669 63.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.6e-211 740.0 589 66.7
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.1e-210 737.3 670 62.1
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 4.0e-210 735.3 669 63.7
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.6e-209 732.6 649 61.9
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 7.5e-209 731.1 575 66.1
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 9.8e-209 730.7 593 65.9
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 9.8e-209 730.7 656 62.7
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.7e-208 729.9 693 59.9
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.9e-208 729.2 660 60.9
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 3.7e-208 728.8 651 61.9
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 4.9e-208 728.4 659 61.5
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 8.3e-208 727.6 651 61.9
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.2e-207 725.7 689 60.4
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 7.1e-207 724.5 649 62.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 9.2e-207 724.2 651 61.8
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 9.2e-207 724.2 646 62.1
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.2e-206 723.8 691 59.8
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 2.7e-206 722.6 651 62.1
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 2.7e-206 722.6 652 63.2
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 2.7e-206 722.6 652 63.2
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.0e-206 721.5 689 60.2
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 7.8e-206 721.1 652 62.0
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.0e-205 719.2 645 61.2
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 6.6e-205 718.0 658 60.5
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 8.6e-205 717.6 660 60.9
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.6e-203 713.4 665 63.0
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.8e-202 709.9 617 63.4
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 2.3e-202 709.5 665 60.9
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 4.0e-202 708.8 646 60.4
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 5.8e-201 704.9 652 61.7
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 3.8e-200 702.2 629 61.0
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.1e-199 700.7 669 61.7
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.1e-198 696.4 660 58.8
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.0e-197 694.1 652 58.7
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.3e-197 693.7 672 58.9
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.6e-197 691.0 645 61.1
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.1e-194 682.6 607 63.8
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.4e-193 679.1 657 60.3
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 3.8e-192 675.6 641 59.9
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 3.9e-189 665.6 643 59.7
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 5.6e-188 661.8 544 63.4
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 4.8e-187 658.7 643 58.6
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.0e-185 653.3 681 57.6
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.0e-181 641.0 662 56.5
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 3.9e-181 639.0 603 63.3
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.5e-180 637.1 615 61.3
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 8.1e-179 631.3 656 56.4
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 3.1e-178 629.4 629 56.8
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.3e-176 624.0 517 64.2
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 6.4e-176 621.7 671 56.2
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 9.3e-175 617.8 655 55.9
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.6e-174 617.1 662 56.2
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 8.7e-173 611.3 665 57.7
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.6e-166 590.5 643 53.2
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 2.1e-158 563.5 619 51.2
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.6e-153 546.6 439 68.3
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 5.9e-137 492.3 538 52.8
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.7e-131 474.2 578 45.3
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 2.8e-131 473.4 610 45.2
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.5e-124 451.1 351 68.9
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 3.7e-123 446.4 657 41.1
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 7.0e-122 442.2 603 44.9
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.0e-108 397.5 423 57.4
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 2.0e-105 387.5 647 42.3
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 2.0e-100 370.9 643 36.4
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.9e-95 354.4 545 43.9
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.6e-94 350.1 351 56.4
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.9e-88 330.1 433 49.0
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.6e-86 324.7 316 55.7
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.5e-84 318.2 298 59.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 9.9e-84 315.5 250 66.4
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 3.1e-77 293.9 312 50.6
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 5.8e-68 263.1 642 30.7
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.0e-53 213.8 191 63.4
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 2.2e-51 208.0 589 28.7
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.9e-50 204.9 149 67.1
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 5.5e-50 203.4 260 47.7
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.8e-48 198.4 254 48.0
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 8.2e-46 189.5 616 27.6
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-40 171.8 254 44.5
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 3.0e-40 171.0 254 44.1
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 2.6e-36 157.9 177 50.8
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 2.1e-33 148.3 114 65.8
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 6.7e-32 143.3 99 71.7
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 2.6e-31 141.4 130 56.9
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.8e-30 137.9 98 66.3
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 3.7e-30 137.5 124 58.1
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.5e-28 132.1 146 54.1
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.2e-25 122.5 189 43.4
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 1.7e-22 112.1 89 64.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.7e-22 110.9 613 26.4
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 4.7e-17 94.0 77 66.2
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 2.3e-16 91.7 81 59.3
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 5.7e-15 87.0 123 43.9
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.3e-14 83.6 142 37.3
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.3e-14 83.6 142 37.3
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 6.3e-14 83.6 142 37.3
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 36.6
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 36.6
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 1.8e-13 82.0 142 36.6
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 2.4e-13 81.6 169 36.1
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 3.1e-13 81.3 99 52.5
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.1e-13 80.9 120 43.3
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 1.0e-08 66.2 54 53.7
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 1.0e-08 66.2 54 53.7
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 1.4e-08 65.9 45 62.2
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 1.4e-08 65.9 44 63.6
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 8.3e-06 56.6 72 43.1


User provided reference genes

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