Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.0e-103 377.9 204 100.0
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.1e-60 237.3 142 95.1
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 6.2e-53 211.5 197 68.0
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 6.3e-45 184.9 192 62.5
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 4.2e-41 172.2 183 59.0
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.2e-40 170.6 197 56.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 6.1e-40 168.3 207 57.5
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.9e-39 165.6 190 56.3
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.1e-38 164.1 146 65.1
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.1e-38 164.1 158 62.7
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.1e-38 164.1 158 62.7
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 7.4e-38 161.4 133 70.7
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.3e-37 160.6 192 55.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.2e-37 159.8 149 65.1
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 8.2e-37 157.9 135 68.1
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.1e-36 157.5 193 54.4
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 2.4e-36 156.4 135 70.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 9.0e-36 154.5 117 74.4
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 4.5e-35 152.1 186 51.6
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 4.5e-35 152.1 200 52.5
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.0e-34 151.0 135 67.4
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.0e-34 151.0 191 53.4
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.7e-34 150.2 209 51.2
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.7e-34 150.2 189 54.5
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 2.2e-34 149.8 119 70.6
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 5.0e-34 148.7 192 52.6
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.1e-33 147.5 186 50.5
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.5e-33 146.4 138 65.2
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 7.2e-33 144.8 156 56.4
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 9.4e-33 144.4 147 60.5
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.2e-32 144.1 131 67.2
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 6.1e-32 141.7 116 65.5
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.0e-31 141.0 163 53.4
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.4e-31 140.6 110 69.1
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 8.8e-31 137.9 106 69.8
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 3.3e-30 136.0 98 77.6
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.3e-30 136.0 98 77.6
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.7e-29 133.7 111 66.7
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 6.3e-29 131.7 121 63.6
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.1e-28 131.0 207 47.3
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 3.1e-28 129.4 95 74.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 9.1e-28 127.9 119 63.0
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 9.1e-28 127.9 119 63.0
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.4e-25 120.6 91 73.6
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 3.2e-25 119.4 92 70.7
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 3.2e-25 119.4 94 69.1
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 5.5e-25 118.6 132 58.3
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 7.2e-25 118.2 113 61.1
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 7.2e-25 118.2 121 59.5
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 7.2e-25 118.2 92 70.7
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 9.4e-25 117.9 92 69.6
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.7e-24 116.3 91 69.2
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 6.1e-24 115.2 122 59.8
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.5e-22 110.5 149 49.0
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 1.7e-21 107.1 165 51.5
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.2e-21 106.7 137 50.4
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.1e-20 104.4 111 51.4
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 2.4e-20 103.2 100 59.0
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 3.1e-20 102.8 91 61.5
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 5.3e-20 102.1 110 54.5
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 7.0e-20 101.7 87 63.2
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 9.1e-20 101.3 91 58.2
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.2e-19 100.9 94 59.6
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.2e-19 100.9 91 58.2
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.2e-19 100.9 89 58.4
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 2.0e-19 100.1 89 58.4
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 2.6e-19 99.8 95 56.8
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.6e-19 99.8 114 51.8
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 3.5e-19 99.4 100 53.0
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.5e-19 99.4 112 52.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.5e-19 99.4 91 57.1
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 3.5e-19 99.4 108 51.9
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.5e-19 99.0 116 52.6
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 5.9e-19 98.6 96 54.2
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 5.9e-19 98.6 113 49.6
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 7.7e-19 98.2 91 57.1
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 7.7e-19 98.2 108 51.9
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 7.7e-19 98.2 108 51.9
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.0e-18 97.8 89 58.4
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.0e-18 97.8 89 58.4
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.0e-18 97.8 89 58.4
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.0e-18 97.8 110 51.8
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.0e-18 97.8 171 42.7
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.3e-18 97.4 89 57.3
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.3e-18 97.4 116 53.4
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.7e-18 97.1 87 59.8
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 1.7e-18 97.1 89 56.2
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 1.7e-18 97.1 91 56.0
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.7e-18 97.1 89 58.4
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.2e-18 96.7 96 53.1
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.2e-18 96.7 89 57.3
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.9e-18 96.3 114 50.9
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.9e-18 96.3 114 50.9
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.9e-18 96.3 111 50.5
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.9e-18 96.3 110 50.9
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.8e-18 95.9 89 56.2
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 3.8e-18 95.9 85 58.8
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 3.8e-18 95.9 85 62.4
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.8e-18 95.9 91 57.1
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.8e-18 95.9 90 57.8
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.8e-18 95.9 89 56.2
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 3.8e-18 95.9 204 39.2
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 5.0e-18 95.5 87 57.5
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 6.5e-18 95.1 87 58.6
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 6.5e-18 95.1 118 51.7
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.1e-17 94.4 89 55.1
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.5e-17 94.0 89 56.2
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.5e-17 94.0 148 43.2
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.5e-17 94.0 114 50.0
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.5e-17 94.0 91 56.0
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.5e-17 94.0 169 37.3
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.9e-17 93.6 147 44.2
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 3.2e-17 92.8 91 54.9
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 3.2e-17 92.8 91 54.9
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 3.2e-17 92.8 89 56.2
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 3.2e-17 92.8 123 43.9
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 3.2e-17 92.8 145 40.7
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 4.2e-17 92.4 89 56.2
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-17 92.4 89 56.2
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-17 92.4 89 56.2
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 4.2e-17 92.4 89 56.2
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 4.2e-17 92.4 89 56.2
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 5.5e-17 92.0 102 53.9
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 5.5e-17 92.0 111 50.5
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 7.2e-17 91.7 114 49.1
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 9.4e-17 91.3 194 43.3
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 9.4e-17 91.3 114 49.1
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 9.4e-17 91.3 87 55.2
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-16 90.9 88 55.7
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.6e-16 90.5 121 47.1
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.1e-16 90.1 119 47.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 4.7e-16 89.0 162 40.7
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 6.1e-16 88.6 91 50.5
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 1.0e-15 87.8 204 38.7
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.0e-15 86.3 127 44.1
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 3.0e-15 86.3 117 46.2
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 5.2e-15 85.5 115 43.5
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 6.7e-15 85.1 87 52.9
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.0e-14 83.6 78 64.1
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 1.7e-13 80.5 84 52.4
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.8e-13 79.7 82 53.7
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.4e-12 77.4 87 52.9
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.1e-12 76.3 185 36.2
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 7.0e-12 75.1 72 58.3
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.2e-11 74.3 91 51.6
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.0e-10 71.2 69 53.6
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 2.2e-10 70.1 129 40.3
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 5.0e-10 68.9 73 47.9
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 8.5e-10 68.2 100 38.0
CSS0038746 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 5.5e-09 65.5 75 57.3
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.2e-08 64.3 81 48.1
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 2.1e-08 63.5 68 51.5
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.7e-08 63.2 71 50.7
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.6e-08 62.8 77 48.1
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 4.7e-08 62.4 60 56.7
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 3.0e-07 59.7 60 51.7
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.0e-07 59.7 109 39.4
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 5.2e-07 58.9 217 29.5
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.2e-06 57.8 53 56.6
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.5e-06 57.4 117 30.8


User provided reference genes

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