Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G179201 Populus trichocarpa HOM05D000424 ORTHO05D008586 9.4e-144 513.5 251 100.0
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 6.7e-57 224.9 201 55.2
Prupe.3G105000 Prunus persica HOM05D000424 ORTHO05D008586 1.6e-50 203.8 252 46.0
MD17G1227800 Malus domestica HOM05D000424 ORTHO05D008586 3.0e-49 199.5 252 45.6
MD17G1228100 Malus domestica HOM05D000424 ORTHO05D008586 3.0e-49 199.5 252 45.6
Dinv10995 Davidia involucrata HOM05D000424 ORTHO05D008586 6.3e-47 191.8 180 56.1
MSTRG.7975 Avicennia marina HOM05D000424 ORTHO05D008586 8.2e-47 191.4 253 42.7
RcHm_v2.0_Chr7g0223501 Rosa chinensis HOM05D000424 ORTHO05D008586 5.3e-46 188.7 254 43.3
FAN12G1611 Fragaria x ananassa HOM05D000424 ORTHO05D008586 3.5e-45 186.0 253 42.3
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 3.5e-45 186.0 253 39.9
FAN13G0831 Fragaria x ananassa HOM05D000424 ORTHO05D008586 1.0e-44 184.5 254 42.5
FvH4_5g29890 Fragaria vesca HOM05D000424 ORTHO05D008586 2.2e-44 183.3 253 42.3
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 2.9e-44 183.0 152 58.6
FvH4_4g36630 Fragaria vesca HOM05D000424 ORTHO05D008586 5.0e-44 182.2 254 42.1
Lj6g0011408 Lotus japonicus HOM05D000424 ORTHO05D008586 5.0e-44 182.2 254 40.6
CANSAT01G2133 Cannabis sativa HOM05D000424 ORTHO05D008586 6.5e-44 181.8 154 59.1
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 8.5e-44 181.4 153 59.5
SGA_v2.0_scaffold34G13606 Striga asiatica HOM05D000424 ORTHO05D008586 8.5e-44 181.4 253 42.7
CSS0034881 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 9.4e-43 177.9 152 57.2
Haze_12363 Corylus avellana HOM05D000424 ORTHO05D008586 1.6e-42 177.2 146 62.3
Thecc.02G273600 Theobroma cacao HOM05D000424 ORTHO05D008586 3.6e-42 176.0 254 42.9
Lj5g0012330 Lotus japonicus HOM05D000424 ORTHO05D008586 8.0e-42 174.9 153 55.6
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.4e-41 174.1 152 55.3
CSS0001753 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 1.8e-41 173.7 152 56.6
Cfa009309 Carpinus fangiana HOM05D000424 ORTHO05D008586 5.2e-41 172.2 248 43.5
Migut.K00691 Erythranthe guttata HOM05D000424 ORTHO05D008586 6.7e-41 171.8 152 55.9
FAN04G2222 Fragaria x ananassa HOM05D000424 ORTHO05D008586 6.7e-41 171.8 251 40.6
Phvul.001G095200 Phaseolus vulgaris HOM05D000424 ORTHO05D008586 1.1e-40 171.0 254 39.0
THA.LOC104805256 Tarenaya hassleriana HOM05D000424 ORTHO05D008586 3.3e-40 169.5 150 53.3
Lalb_Chr12g0210351 Lupinus albus HOM05D000424 ORTHO05D008586 4.4e-40 169.1 153 54.9
Gohir.D02G152900 Gossypium hirsutum HOM05D000424 ORTHO05D008586 7.5e-40 168.3 254 41.7
Gohir.A03G129100 Gossypium hirsutum HOM05D000424 ORTHO05D008586 1.7e-39 167.2 254 41.3
Gorai.005G172000 Gossypium raimondii HOM05D000424 ORTHO05D008586 1.7e-39 167.2 254 41.3
Haze_12359 Corylus avellana HOM05D000424 ORTHO05D008586 2.2e-39 166.8 146 61.0
SalBow2G1939 Salvia bowleyana HOM05D000424 ORTHO05D008586 2.8e-39 166.4 151 56.3
Atru.chr11.2237 Acer truncatum HOM05D000424 ORTHO05D008586 3.7e-39 166.0 153 54.9
EL10Ac6g13428 Beta vulgaris HOM05D000424 ORTHO05D008586 4.8e-39 165.6 152 53.9
Sed0028237 Sechium edule HOM05D000424 ORTHO05D008586 4.8e-39 165.6 148 57.4
AT3G04130 Arabidopsis thaliana HOM05D000424 ORTHO05D008586 1.1e-38 164.5 248 39.1
COL.COLO4_23614 Corchorus olitorius HOM05D000424 ORTHO05D008586 1.4e-38 164.1 153 56.2
Nn3g18338 Nelumbo nucifera HOM05D000424 ORTHO05D008586 1.4e-38 164.1 152 53.3
Oeu020314.1 Olea europaea HOM05D000424 ORTHO05D008586 1.4e-38 164.1 251 39.4
Rhsim12G0106100 Rhododendron simsii HOM05D000424 ORTHO05D008586 1.4e-38 164.1 152 54.6
Aa31LG5G14670 Aethionema arabicum HOM05D000424 ORTHO05D008586 3.1e-38 162.9 151 52.3
PGSC0003DMG400017435 Solanum tuberosum HOM05D000424 ORTHO05D008586 5.3e-38 162.2 148 52.7
BolC5t34951H Brassica oleracea HOM05D000424 ORTHO05D008586 1.2e-37 161.0 252 38.5
Nitab4.5_0001898g0020 Nicotiana tabacum HOM05D000424 ORTHO05D008586 1.2e-37 161.0 148 52.0
CARHR078260 Cardamine hirsuta HOM05D000424 ORTHO05D008586 2.7e-37 159.8 243 39.5
Medtr7g005780 Medicago truncatula HOM05D000424 ORTHO05D008586 4.5e-37 159.1 202 42.1
Cpa.g.sc43.5 Carica papaya HOM05D000424 ORTHO05D008586 7.7e-37 158.3 200 44.0
arahy.Tifrunner.gnm1.ann1.5FY1X2 Arachis hypogaea HOM05D000424 ORTHO05D008586 1.0e-36 157.9 153 50.3
BcaC05g29964 Brassica carinata HOM05D000424 ORTHO05D008586 1.0e-36 157.9 252 38.1
C05p62960 Brassica napus HOM05D000424 ORTHO05D008586 1.0e-36 157.9 252 38.1
arahy.Tifrunner.gnm1.ann1.QBYX8U Arachis hypogaea HOM05D000424 ORTHO05D008586 1.3e-36 157.5 152 50.0
Carub.0003s0338 Capsella rubella HOM05D000424 ORTHO05D008586 1.3e-36 157.5 149 53.0
AL3G14040 Arabidopsis lyrata HOM05D000424 ORTHO05D008586 2.2e-36 156.8 149 53.0
Thhalv10020548m.g Eutrema salsugineum HOM05D000424 ORTHO05D008586 2.2e-36 156.8 243 38.3
AUR62024165 Chenopodium quinoa HOM05D000424 ORTHO05D008586 2.9e-36 156.4 146 54.1
Solyc05g014490.3 Solanum lycopersicum HOM05D000424 ORTHO05D008586 2.9e-36 156.4 148 52.0
Medtr7g029515 Medicago truncatula HOM05D000424 ORTHO05D008586 3.8e-36 156.0 153 48.4
Lsat_1_v5_gn_8_151840 Lactuca sativa HOM05D000424 ORTHO05D008586 5.0e-36 155.6 152 52.6
Sp3g03100 Schrenkiella parvula HOM05D000424 ORTHO05D008586 6.5e-36 155.2 149 51.7
Sopen05g009570 Solanum pennellii HOM05D000424 ORTHO05D008586 6.5e-36 155.2 148 50.7
BraA05t23064Z Brassica rapa HOM05D000424 ORTHO05D008586 8.5e-36 154.8 252 37.3
CAN.G1038.8 Capsicum annuum HOM05D000424 ORTHO05D008586 1.1e-35 154.5 256 37.1
Sc11g0000690 Simmondsia chinensis HOM05D000424 ORTHO05D008586 1.5e-35 154.1 152 50.0
A05p43220 Brassica napus HOM05D000424 ORTHO05D008586 1.9e-35 153.7 254 36.6
TAR374G1548 Trochodendron aralioides HOM05D000424 ORTHO05D008586 5.5e-35 152.1 153 52.3
Cc02_g24080 Coffea canephora HOM05D000424 ORTHO05D008586 1.2e-34 151.0 253 36.4
BcaC05g30215 Brassica carinata HOM05D000424 ORTHO05D008586 2.7e-34 149.8 249 36.9
Aqoxy5G03537 Aquilegia oxysepala HOM05D000424 ORTHO05D008586 4.7e-34 149.1 148 52.7
Ah.03g133830 Amaranthus hybridus HOM05D000424 ORTHO05D008586 3.0e-33 146.4 145 52.4
Medtr1g056160 Medicago truncatula HOM05D000424 ORTHO05D008586 8.8e-33 144.8 153 47.7
Manes.13G015300 Manihot esculenta HOM05D000424 ORTHO05D008586 2.0e-32 143.7 99 70.7
TPR.G38275 Trifolium pratense HOM05D000424 ORTHO05D008586 8.3e-31 138.3 153 46.4
Eucgr.H04672 Eucalyptus grandis HOM05D000424 ORTHO05D008586 5.4e-30 135.6 99 65.7
HanXRQChr08g0207431 Helianthus annuus HOM05D000424 ORTHO05D008586 1.2e-29 134.4 132 50.0
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 2.7e-29 133.3 152 48.0
Lj6P821T28 Lonicera japonica HOM05D000424 ORTHO05D008586 5.9e-29 132.1 115 55.7
HanXRQChr08g0207401 Helianthus annuus HOM05D000424 ORTHO05D008586 7.7e-29 131.7 200 37.0
CDE06G1162 Ceratophyllum demersum HOM05D000424 ORTHO05D008586 1.0e-28 131.3 249 35.3
DCAR_024082 Daucus carota HOM05D000424 ORTHO05D008586 5.0e-28 129.0 252 33.3
DCAR_013708 Daucus carota HOM05D000424 ORTHO05D008586 8.5e-28 128.3 252 32.9
Glyma.16G058400 Glycine max HOM05D000424 ORTHO05D008586 4.2e-27 125.9 98 60.2
PSO782G4466 Papaver somniferum HOM05D000424 ORTHO05D008586 1.6e-26 124.0 152 43.4
QL03p055001 Quercus lobata HOM05D000424 ORTHO05D008586 2.7e-26 123.2 82 72.0
ECA233G0630 Erigeron canadensis HOM05D000424 ORTHO05D008586 8.0e-26 121.7 116 50.0
HPP92_008081 Vanilla planifolia HOM05D000424 ORTHO05D008586 1.8e-25 120.6 148 44.6
Actinidia25755 Actinidia chinensis HOM05D000424 ORTHO05D008586 5.2e-25 119.0 106 55.7
Os02g0601600 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D008586 2.2e-23 113.6 154 39.6
Psat7g264040 Pisum sativum HOM05D000424 ORTHO05D008586 8.3e-23 111.7 91 54.9
Zm00001eb246390 Zea mays HOM05D000424 ORTHO05D008586 3.1e-22 109.8 152 39.5
Eucgr.J02931 Eucalyptus grandis HOM05D000424 ORTHO05D008586 1.6e-21 107.5 73 68.5
HanXRQChr08g0207451 Helianthus annuus HOM05D000424 ORTHO05D008586 2.0e-21 107.1 92 54.3
Peaxi162Scf00128g00087 Petunia axillaris HOM05D000424 ORTHO05D008586 2.3e-17 93.6 93 49.5
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 5.2e-17 92.4 135 40.0
MBI07_g21926_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D008586 1.2e-16 91.3 149 35.6
Glyma.19G088850 Glycine max HOM05D000424 ORTHO05D008586 4.9e-15 85.9 102 43.1
BcaC01g03431 Brassica carinata HOM05D000424 ORTHO05D000355 7.0e-14 82.0 138 36.2
FvH4_4g00721 Fragaria vesca HOM05D000424 ORTHO05D000355 7.0e-14 82.0 128 38.3
A03p42890 Brassica napus HOM05D000424 ORTHO05D008586 2.0e-13 80.5 137 36.5
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 2.0e-13 80.5 130 38.5
AL3G36970 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 3.5e-13 79.7 130 38.5
GSVIVG01010329001 Vitis vinifera HOM05D000424 ORTHO05D008586 3.5e-13 79.7 53 64.2
C03p52660 Brassica napus HOM05D000424 ORTHO05D000355 5.9e-13 79.0 135 36.3
TWI09G0390 Tripterygium wilfordii HOM05D000424 ORTHO05D008586 1.0e-12 78.2 146 35.6
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 1.7e-12 77.4 125 38.4
MBI16_g31775_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D008586 1.7e-12 77.4 63 58.7
Cpa.g.sc332.2 Carica papaya HOM05D007173 ORTHO05D009589 2.3e-12 77.0 201 27.9
A03p42910 Brassica napus HOM05D000424 ORTHO05D000355 3.9e-12 76.3 135 35.6
Sabra10G0049500 Salix brachista HOM05D000424 ORTHO05D008586 5.0e-12 75.9 39 92.3
Sp3g20430 Schrenkiella parvula HOM05D000424 ORTHO05D000355 5.0e-12 75.9 131 36.6
BraA03t13435Z Brassica rapa HOM05D000424 ORTHO05D000355 1.1e-11 74.7 131 35.9
BolC3t17534H Brassica oleracea HOM05D000424 ORTHO05D000355 1.5e-11 74.3 132 35.6
Ca_27827_v3 Cicer arietinum L. HOM05D000424 ORTHO05D008586 1.5e-11 74.3 152 32.9
BcaB04g19212 Brassica carinata HOM05D000424 ORTHO05D000355 3.3e-11 73.2 125 36.8
BcaB03g14655 Brassica carinata HOM05D000424 ORTHO05D000355 4.3e-11 72.8 124 36.3
Potri.010G055500 Populus trichocarpa HOM05D000424 ORTHO05D008586 5.6e-11 72.4 37 91.9
BcaB04g20505 Brassica carinata HOM05D000424 ORTHO05D039391 1.2e-10 71.2 167 31.1
Ciclev10005379m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.2e-10 71.2 240 27.5
CsaV3_5G030530 Cucumis sativus L. HOM05D000424 ORTHO05D008586 2.8e-10 70.1 254 26.4
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 4.7e-10 69.3 197 28.4
FAN18G2809 Fragaria x ananassa HOM05D000424 ORTHO05D008586 1.5e-08 64.3 69 49.3
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 2.6e-08 63.5 253 24.5
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 3.4e-08 63.2 136 31.6
Glyma.14G044600 Glycine max HOM05D007173 ORTHO05D009151 7.5e-08 62.0 147 32.0
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 2.9e-07 60.1 178 26.4
Nn3g21915 Nelumbo nucifera HOM05D007830 ORTHO05D009947 2.9e-07 60.1 87 35.6
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 4.9e-07 59.3 141 29.1
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 6.4e-07 58.9 198 26.8
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 6.4e-07 58.9 174 28.2
Glyma.02G271600 Glycine max HOM05D007173 ORTHO05D009151 1.1e-06 58.2 178 27.5
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 1.4e-06 57.8 224 24.6
Nitab4.5_0000085g0350 Nicotiana tabacum HOM05D000424 ORTHO05D008586 1.4e-06 57.8 128 29.7
CSS0036990 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 1.9e-06 57.4 145 29.7
CSS0040738 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 1.9e-06 57.4 145 29.7
RcHm_v2.0_Chr1g0322101 Rosa chinensis HOM05D000424 ORTHO05D008586 3.2e-06 56.6 66 42.4
RcHm_v2.0_Chr2g0112421 Rosa chinensis HOM05D000001 ORTHO05D000003 3.2e-06 56.6 102 35.3
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 5.4e-06 55.8 169 30.2
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 5.4e-06 55.8 268 23.5


User provided reference genes

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