Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 0.0e+00 1212.6 592 100.0
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 0.0e+00 1130.5 592 92.6
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 7.1e-307 1056.6 632 83.4
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 4.3e-296 1020.8 592 81.2
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 1.8e-294 1015.4 593 81.6
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.6e-290 1002.3 593 81.1
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 4.3e-288 994.2 593 80.8
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.3e-287 992.6 595 80.0
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.1e-287 991.9 593 80.6
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.5e-285 985.7 597 79.7
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 2.0e-285 985.3 596 79.9
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.3e-284 982.6 593 79.6
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 2.2e-284 981.9 594 80.0
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.0e-281 973.0 593 80.4
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.1e-280 969.5 593 77.9
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 3.3e-280 968.0 593 77.9
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 4.8e-279 964.1 597 78.6
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 9.0e-278 959.9 593 76.6
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 9.9e-277 956.4 593 76.6
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 3.8e-276 954.5 593 78.1
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 6.4e-276 953.7 593 76.2
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 1.9e-275 952.2 593 77.1
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 1.6e-274 949.1 593 76.2
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.5e-272 942.6 594 76.1
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 7.4e-272 940.3 596 76.3
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 9.6e-272 939.9 594 76.8
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 9.0e-270 933.3 601 75.0
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 2.5e-267 925.2 630 72.9
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 1.6e-266 922.5 594 75.4
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 1.6e-266 922.5 595 75.1
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 2.3e-265 918.7 632 70.3
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 3.9e-265 917.9 595 74.6
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 6.7e-265 917.1 598 74.9
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.1e-264 916.4 593 74.9
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 1.5e-264 916.0 592 74.0
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 4.3e-264 914.4 581 76.4
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 9.7e-264 913.3 596 74.0
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 8.2e-263 910.2 593 74.4
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 2.4e-262 908.7 595 74.1
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 3.1e-262 908.3 592 75.3
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 2.2e-260 902.1 593 73.7
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 2.2e-260 902.1 669 68.3
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 5.0e-260 901.0 593 73.2
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.9e-259 899.0 603 73.8
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 9.4e-259 896.7 553 79.4
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 1.0e-257 893.3 554 79.1
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 4.3e-256 887.9 593 73.0
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 9.7e-256 886.7 595 73.1
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 9.7e-256 886.7 616 71.3
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 3.4e-253 878.2 595 72.6
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 2.1e-250 869.0 645 67.3
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 6.1e-250 867.5 596 72.1
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.0e-249 866.7 595 71.8
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.0e-249 866.7 595 71.9
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 9.7e-248 860.1 597 71.0
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 1.8e-246 855.9 569 72.1
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 4.5e-245 851.3 590 71.2
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 4.2e-243 844.7 593 69.0
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 2.1e-242 842.4 585 71.8
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.8e-241 839.3 596 69.1
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 3.0e-241 838.6 593 69.8
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 8.2e-239 830.5 536 75.7
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 1.8e-238 829.3 652 64.6
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 2.0e-237 825.9 594 66.8
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 2.9e-236 822.0 594 66.5
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 3.6e-234 815.1 597 69.8
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.2e-232 810.1 593 69.8
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 7.5e-232 807.4 595 65.2
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 2.2e-231 805.8 595 65.5
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.8e-230 802.7 546 72.2
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 4.1e-230 801.6 605 68.6
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 7.0e-230 800.8 573 70.2
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 7.7e-229 797.3 595 67.4
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.2e-226 790.0 530 72.1
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 6.1e-226 787.7 595 64.5
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.3e-225 785.8 605 65.6
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 7.5e-224 780.8 599 67.1
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 9.8e-224 780.4 518 74.7
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 2.8e-223 778.9 593 64.8
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 4.8e-223 778.1 592 64.2
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.4e-222 776.5 596 64.3
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 7.0e-222 774.2 598 64.2
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.7e-221 772.3 528 72.9
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 5.9e-221 771.2 596 63.9
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 1.1e-219 766.9 597 63.7
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 4.2e-219 765.0 596 63.6
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.6e-218 761.9 509 74.1
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.0e-217 760.4 594 63.8
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.4e-216 755.0 485 75.9
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 8.3e-215 750.7 615 61.5
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 4.1e-214 748.4 687 57.6
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 1.7e-212 743.0 600 60.8
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 3.6e-210 735.3 573 64.9
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 8.9e-209 730.7 599 60.3
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 7.5e-208 727.6 556 64.4
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.3e-175 620.5 531 61.2
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 6.4e-159 565.1 379 71.5
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.4e-145 520.0 391 65.7
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 1.7e-138 497.3 618 46.1
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 6.7e-132 475.3 530 51.7
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 2.8e-130 469.9 434 55.5
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 1.1e-121 441.4 597 41.0
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 5.4e-105 386.0 245 76.3
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 1.5e-91 341.3 205 80.0
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 2.4e-81 307.4 287 55.4
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.2e-80 305.1 251 57.8
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-76 291.2 624 34.1
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.1e-63 246.5 167 68.3
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 1.1e-41 175.6 161 57.8
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.1e-39 166.8 134 61.2
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 3.2e-33 147.5 107 72.9
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 9.3e-33 146.0 121 54.5
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.3e-31 142.1 81 79.0
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 4.2e-25 120.6 69 78.3
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 2.6e-19 101.3 87 59.8
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 2.7e-16 91.3 311 25.1
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 4.7e-16 90.5 52 82.7
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 4.5e-11 73.9 44 77.3
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 1.3e-10 72.4 38 78.9
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.7e-10 72.0 55 54.5
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.5e-09 68.9 60 56.7
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.6e-08 65.5 32 93.8
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 1.5e-06 58.9 63 50.8


User provided reference genes

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