Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 9.3e-251 869.8 452 100.0
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 9.1e-238 826.6 479 90.6
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 2.5e-219 765.4 459 86.1
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 4.5e-213 744.6 459 83.7
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.1e-211 740.0 460 83.9
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 5.5e-211 737.6 460 82.6
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 1.0e-209 733.4 458 83.8
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 3.4e-208 728.4 462 84.2
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.1e-206 723.4 459 78.9
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 1.4e-206 723.0 467 82.4
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 2.4e-206 722.2 460 81.5
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 2.4e-206 722.2 459 79.3
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 4.1e-206 721.5 459 79.1
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 9.2e-206 720.3 456 80.7
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.7e-204 716.1 461 80.0
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.3e-204 715.7 459 78.4
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 9.5e-203 710.3 458 79.9
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 4.7e-202 708.0 467 82.2
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 8.0e-202 707.2 460 80.0
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.8e-201 706.1 461 82.2
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 3.0e-201 705.3 460 79.8
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 4.0e-201 704.9 460 81.5
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 5.2e-201 704.5 462 79.4
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 6.8e-201 704.1 459 78.2
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 8.9e-201 703.7 460 79.8
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 8.9e-201 703.7 461 80.0
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 8.9e-201 703.7 458 78.2
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 2.6e-200 702.2 449 80.6
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.3e-199 699.9 462 80.1
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 2.2e-199 699.1 462 80.3
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 3.7e-199 698.4 459 78.4
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 3.2e-198 695.3 461 80.0
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 4.1e-198 694.9 462 80.7
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 4.1e-198 694.9 461 80.0
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 7.0e-198 694.1 457 77.0
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 7.0e-198 694.1 459 77.8
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 9.2e-198 693.7 455 78.2
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.2e-197 693.3 461 80.0
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 2.0e-197 692.6 461 79.8
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 2.0e-197 692.6 455 78.2
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 2.7e-197 692.2 416 85.1
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 4.6e-197 691.4 468 76.7
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 1.3e-196 689.9 462 79.2
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 3.0e-196 688.7 454 76.7
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 3.9e-196 688.3 465 78.9
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 5.0e-196 688.0 464 79.3
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 5.0e-196 688.0 462 79.2
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 1.1e-195 686.8 479 74.9
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 1.5e-195 686.4 425 84.0
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 1.9e-195 686.0 455 78.2
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.9e-195 686.0 454 78.0
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 9.5e-195 683.7 468 76.3
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.1e-194 682.6 469 78.7
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 2.8e-194 682.2 467 76.7
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 8.0e-194 680.6 465 78.3
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 5.2e-193 677.9 462 76.4
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.5e-192 676.4 425 82.6
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.6e-192 675.6 459 76.9
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 4.4e-192 674.9 440 80.0
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 5.8e-192 674.5 462 78.8
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 7.5e-192 674.1 459 76.7
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 2.2e-191 672.5 467 76.0
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 8.3e-191 670.6 465 75.3
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 8.3e-191 670.6 464 76.1
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.4e-190 669.8 509 70.3
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 1.9e-190 669.5 462 75.3
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 2.0e-189 666.0 451 79.4
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.0e-188 663.7 463 74.9
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.0e-188 662.1 492 72.6
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 3.9e-188 661.8 457 75.1
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 1.5e-187 659.8 462 74.5
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 1.9e-187 659.4 461 74.4
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 4.3e-187 658.3 461 74.8
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.6e-187 657.9 457 74.8
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 3.6e-186 655.2 461 73.5
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 3.6e-186 655.2 487 71.3
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 3.6e-186 655.2 461 74.4
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 1.1e-185 653.7 461 73.5
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 2.3e-185 652.5 462 73.6
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 8.9e-185 650.6 469 72.9
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 7.5e-184 647.5 459 73.6
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 7.5e-184 647.5 459 73.6
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 7.5e-184 647.5 459 73.6
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 2.9e-183 645.6 469 74.8
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 4.9e-183 644.8 462 73.2
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 4.9e-183 644.8 469 74.8
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 1.1e-182 643.7 469 74.6
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 1.9e-182 642.9 461 72.7
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 3.2e-182 642.1 458 73.1
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 5.4e-182 641.3 464 72.4
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 7.1e-182 641.0 467 72.8
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.7e-181 639.0 447 76.3
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 2.7e-181 639.0 462 72.7
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 4.6e-181 638.3 416 77.2
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 6.0e-181 637.9 460 72.8
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.3e-180 636.7 460 72.6
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 3.3e-179 632.1 416 75.5
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.3e-179 632.1 446 75.8
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 1.5e-176 623.2 456 70.4
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.5e-176 623.2 459 71.0
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 2.0e-176 622.9 405 76.3
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.6e-173 613.2 396 77.0
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 2.1e-173 612.8 464 71.1
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 3.3e-171 605.5 449 70.2
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 6.2e-170 601.3 461 69.4
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 8.1e-170 600.9 457 68.3
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 9.3e-166 587.4 415 75.4
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.5e-163 580.1 393 75.3
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.5e-163 580.1 415 70.1
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 5.3e-161 571.6 456 65.4
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 7.9e-149 531.2 380 74.7
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.4e-142 510.4 318 82.7
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 3.0e-140 502.7 399 63.4
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 1.9e-139 500.0 409 60.4
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.5e-131 473.8 401 59.4
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.4e-116 424.1 461 53.1
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.0e-108 397.9 287 69.0
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 2.3e-100 370.2 410 52.2
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 4.8e-98 362.5 535 38.7
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 2.3e-95 353.6 258 76.0
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 3.0e-79 300.1 188 80.3
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 5.1e-71 272.7 265 60.0
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 8.1e-61 238.8 250 56.4
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 1.1e-60 238.4 250 56.4
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 2.4e-57 227.3 207 64.3
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.1e-48 197.6 159 68.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.3e-47 194.1 145 69.0
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 8.4e-42 175.6 148 62.8
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.0e-36 156.8 119 73.1
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 5.8e-35 152.9 125 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.8e-31 141.4 366 31.4
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 1.9e-22 111.3 60 86.7
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 8.5e-18 95.9 59 76.3
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 3.6e-16 90.5 70 72.9
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.7e-13 81.6 57 75.4
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 3.8e-10 70.5 65 63.1


User provided reference genes

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