Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 9.7e-234 813.9 507 100.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 2.8e-217 759.2 507 93.9
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 8.5e-129 465.3 494 67.0
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 4.6e-127 459.5 449 71.9
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 8.8e-126 455.3 499 66.9
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 4.2e-120 436.4 464 68.8
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 2.0e-117 427.6 503 64.2
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 9.4e-112 408.7 438 68.7
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 4.7e-111 406.4 478 64.6
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 2.0e-109 401.0 374 76.2
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 9.7e-109 398.7 470 67.4
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 6.3e-108 396.0 417 68.3
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 7.7e-106 389.0 388 69.1
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 6.5e-105 386.0 418 66.3
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 6.7e-102 375.9 464 64.9
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 8.8e-102 375.6 393 67.7
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.2e-101 375.2 422 64.0
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 5.7e-101 372.9 501 58.9
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.7e-100 371.3 396 66.9
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 8.3e-100 369.0 383 70.2
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.5e-98 363.6 380 69.7
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 3.5e-98 363.6 405 66.7
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 5.9e-98 362.8 457 62.6
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.8e-97 360.1 457 62.6
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 5.0e-97 359.8 429 63.4
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.5e-96 358.2 368 71.7
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 1.8e-94 351.3 458 61.8
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 2.3e-94 350.9 475 60.8
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 3.4e-93 347.1 403 49.4
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 7.5e-93 345.9 403 49.1
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.3e-92 345.1 403 48.9
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.3e-92 345.1 403 48.9
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 4.1e-91 340.1 456 62.9
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.7e-89 334.7 405 61.2
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 5.0e-89 333.2 495 54.5
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 6.6e-89 332.8 447 60.2
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.1e-88 332.0 455 58.9
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.1e-88 332.0 460 59.6
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 1.2e-87 328.6 406 47.8
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 4.7e-87 326.6 419 53.7
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 8.0e-87 325.9 384 67.4
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.4e-86 325.1 489 56.0
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 5.7e-85 319.7 355 68.7
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.8e-84 317.4 504 56.7
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.4e-83 314.3 366 68.9
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 4.5e-82 310.1 429 60.4
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 9.5e-80 302.4 258 65.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 4.7e-79 300.1 460 55.2
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 1.4e-78 298.5 261 59.0
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.8e-78 298.1 369 64.2
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.8e-78 298.1 326 74.5
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 2.3e-78 297.7 414 59.4
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 4.0e-78 297.0 378 61.4
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 1.2e-77 295.4 414 61.1
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 7.0e-75 286.2 345 63.8
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.1e-72 278.9 258 59.7
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.1e-70 272.3 426 58.5
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 3.1e-70 270.8 173 74.6
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 3.1e-70 270.8 185 70.3
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 6.8e-70 269.6 262 56.9
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 3.4e-69 267.3 260 56.2
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 4.9e-68 263.5 368 59.8
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 8.3e-68 262.7 377 57.3
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 3.2e-67 260.8 271 53.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 3.5e-66 257.3 259 55.6
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 3.5e-66 257.3 269 52.8
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 7.8e-66 256.1 267 51.7
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.3e-65 254.6 391 61.6
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 2.3e-65 254.6 317 68.1
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 5.6e-64 250.0 346 60.7
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 7.3e-64 249.6 494 50.2
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 9.5e-64 249.2 237 57.0
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 8.1e-63 246.1 261 52.1
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 2.1e-58 231.5 171 60.8
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.7e-57 228.4 179 60.9
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.1e-56 225.7 252 49.6
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.2e-55 222.2 217 53.5
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 9.2e-51 206.1 173 60.7
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 5.1e-49 200.3 268 69.4
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 4.8e-47 193.7 242 72.3
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.5e-45 188.7 141 58.9
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 7.6e-45 186.4 381 45.7
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.5e-42 177.6 115 70.4
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 1.1e-40 172.6 171 49.7
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 7.3e-40 169.9 91 86.8
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 9.0e-38 162.9 126 60.3
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 9.0e-38 162.9 126 60.3
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 1.2e-37 162.5 119 63.9
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 1.2e-37 162.5 119 63.9
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 3.9e-33 147.5 264 56.8
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 2.8e-31 141.4 162 43.8
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 2.4e-30 138.3 159 42.1
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 9.0e-30 136.3 435 42.3
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.2e-29 136.0 207 76.8
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 1.0e-28 132.9 136 47.1
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.0e-25 122.9 69 84.1
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 7.4e-24 116.7 167 37.7
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 5.8e-21 107.1 67 74.6
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.3e-17 95.1 164 37.8
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 4.8e-15 87.4 85 49.4
arahy.Tifrunner.gnm1.ann1.ANG7EI Arachis hypogaea HOM05D002444 ORTHO05D009235 1.6e-10 72.4 64 50.0
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 2.1e-10 72.0 128 31.2
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 2.7e-10 71.6 128 32.0
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 6.1e-10 70.5 142 25.4
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 7.9e-10 70.1 142 26.1
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 1.8e-09 68.9 142 29.6
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 3.9e-09 67.8 160 26.2
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 6.7e-09 67.0 142 25.4
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 8.8e-09 66.6 166 27.7
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 8.8e-09 66.6 142 25.4
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 1.1e-08 66.2 160 26.2
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 1.5e-08 65.9 140 25.7
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 2.0e-08 65.5 159 33.3
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 2.0e-08 65.5 170 24.1
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 2.5e-08 65.1 142 24.6
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 3.3e-08 64.7 177 25.4
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 4.3e-08 64.3 142 25.4
Zm00001eb059330 Zea mays HOM05D011046 ORTHO05D013342 4.3e-08 64.3 160 26.2
ATR0697G276 Amborella trichopoda HOM05D002444 ORTHO05D009235 5.7e-08 63.9 73 43.8
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 9.7e-08 63.2 136 31.6
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 1.3e-07 62.8 135 26.7
Lalb_Chr19g0125351 Lupinus albus HOM05D002986 ORTHO05D003966 2.2e-07 62.0 139 28.8
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 2.8e-07 61.6 150 24.7
Lsat_1_v5_gn_8_99341 Lactuca sativa HOM05D008470 ORTHO05D010644 2.8e-07 61.6 146 27.4
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 2.8e-07 61.6 166 30.7
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 3.7e-07 61.2 50 56.0
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 4.8e-07 60.8 131 28.2
Atru.BG.215.p Acer truncatum HOM05D006740 ORTHO05D008571 8.2e-07 60.1 123 30.9
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 8.2e-07 60.1 156 31.4
CiPaw.01G104100 Carya illinoinensis HOM05D007128 ORTHO05D009059 8.2e-07 60.1 163 27.6
Sabra10G0031400 Salix brachista HOM05D006740 ORTHO05D008571 8.2e-07 60.1 150 22.7
AL5G28320 Arabidopsis lyrata HOM05D007409 ORTHO05D009264 1.1e-06 59.7 117 29.1
CsaV3_6G003710 Cucumis sativus L. HOM05D007128 ORTHO05D009059 1.4e-06 59.3 137 29.2
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 1.4e-06 59.3 165 26.1
Nitab4.5_0002527g0080 Nicotiana tabacum HOM05D000716 ORTHO05D004822 1.4e-06 59.3 131 26.7
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 1.4e-06 59.3 143 25.2
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 1.4e-06 59.3 166 30.1
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 1.4e-06 59.3 237 27.0
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 1.8e-06 58.9 163 28.8
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 1.8e-06 58.9 133 25.6
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 1.8e-06 58.9 143 25.2
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 1.8e-06 58.9 142 30.3
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 1.8e-06 58.9 144 31.2
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 2.4e-06 58.5 137 29.9
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 3.1e-06 58.2 137 29.9
CiPaw.01G097300 Carya illinoinensis HOM05D007128 ORTHO05D009059 3.1e-06 58.2 163 27.0
Solyc01g096210.4 Solanum lycopersicum HOM05D002986 ORTHO05D003966 3.1e-06 58.2 131 26.7
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 3.1e-06 58.2 143 23.8
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 3.1e-06 58.2 143 23.8
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 3.1e-06 58.2 143 23.8
THA.LOC104818868 Tarenaya hassleriana HOM05D007409 ORTHO05D009264 3.1e-06 58.2 131 26.7
CARHR157620 Cardamine hirsuta HOM05D007409 ORTHO05D009264 4.1e-06 57.8 155 27.1
AL1G16720 Arabidopsis lyrata HOM05D007128 ORTHO05D009059 5.3e-06 57.4 144 27.1
A01p25200 Brassica napus HOM05D007409 ORTHO05D009264 5.3e-06 57.4 133 27.1
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 5.3e-06 57.4 163 28.2
Carub.0005s1497 Capsella rubella HOM05D007409 ORTHO05D009264 5.3e-06 57.4 128 28.9
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 5.3e-06 57.4 167 22.8
Sp5g13220 Schrenkiella parvula HOM05D007409 ORTHO05D009264 5.3e-06 57.4 123 28.5
BcaC09g49905 Brassica carinata HOM05D007409 ORTHO05D009264 6.9e-06 57.0 133 27.1
A05p32770 Brassica napus HOM05D002444 ORTHO05D040376 6.9e-06 57.0 54 40.7
C01p31450 Brassica napus HOM05D007409 ORTHO05D009264 6.9e-06 57.0 133 27.1
BolC1t03079H Brassica oleracea HOM05D007409 ORTHO05D009264 6.9e-06 57.0 133 27.1
BraA01t02429Z Brassica rapa HOM05D007409 ORTHO05D009264 6.9e-06 57.0 133 27.1
BraA05t22099Z Brassica rapa HOM05D002444 ORTHO05D040376 6.9e-06 57.0 54 40.7
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 6.9e-06 57.0 143 30.1
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 6.9e-06 57.0 143 30.1
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 6.9e-06 57.0 144 23.6
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 6.9e-06 57.0 147 26.5
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 9.1e-06 56.6 144 29.2
BcaB05g22985 Brassica carinata HOM05D007409 ORTHO05D009264 9.1e-06 56.6 133 27.1
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 9.1e-06 56.6 115 27.8
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 9.1e-06 56.6 127 28.3
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 9.1e-06 56.6 166 23.5
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 9.1e-06 56.6 171 26.9
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 9.1e-06 56.6 137 29.2


User provided reference genes

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